Daphnia magna (water flea): 116917164
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Entry
116917164 CDS
T07514
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04140
Autophagy - animal
dmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116917164
04148 Efferocytosis
116917164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
116917164
Membrane trafficking [BR:
dmk04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116917164
Hops complex
116917164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4
zf-RING_Vps41
zf-RING_11
zf-RING_UBOX
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
116917164
NCBI-ProteinID:
XP_032778425
LinkDB
All DBs
Position
LG2:8734220..8738648
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AA seq
984 aa
AA seq
DB search
MTSILDQYEKASKQAGTTVFINTLLENERPMFAKQKVAYTPQYPVHHMGAQSGRIALVLV
NNTLLRIDTQLPDNIDELDLNKNLTVGYKIQRLFVDPTGCHILVSAVHKDRERDPEREDN
NAELIYVHANSAKPRQVTKTKGNFITAVGWCTSNIGQTTGPILLGTSKGFIYETEINQSG
NEIYWKQVFDLGRGTPTMITGLEYFRLRSAGEGQSVYGVLITTMTKLYQFQGNLMNRMDD
RPLLQSIFHAYLNTKEKFLEIPSEFAVSRLRLCFANDQPTQVAWMTGNGVLLAQVSDKDG
VLSPQHRMIPYPLPDTSSEPSEISKKRGHHKFPLEVALTPFHLAMVFYDRLRIICTVNQQ
LVYEDTYDQSFGDLRGLTCDGRNKKNQQGPVLWSFADYALFRYTITDESRHIWQMYMEQK
QFDLALQFCGNNASQRSQVLLHQAHHLLSKHQYEKAAKLYAQTEASFEEVALKFMEIKQE
DALQAFLLEKASRLKGDQRMQLSMLVLWLLELMLRKLGSLKDAGIKTDSPQYQSSWDTLN
RFTEQRRIMECIKSNLGAVYSLLSSHGLHDVMLHLAGKLKDSQRIMEQHLLDRNYKEALN
VLLESSDSELLYNACPVLLQEQPKETVDMLIYKAHKLELTRVTPLLFAALSDGDTRLAKE
IIRFVEHCAYQLNCKDRSLHTLLFSLYIRYDPDKTLPYLNGQGDDVKTVPYDAQSALRLC
LAADTRQLQACVLLYRIMGLYQPAVEMALKVDAALARQTADMPEENEELRKKLWLRIARH
VVEKERDIQRAMAVLQQCNLLKIEDVLPFFPDFTTIDLFKDAISQSLQEYSHHLDTLKEE
MEEATKAADALRHEIQAFRHKSIVVQTGDHCHLCRSPLLTRSAYLFPCGHRFHGDCLLPR
VLTTMSQMRRERVAELQRELASLPNNDADSLSLASSSLGTREQLLQDLDDIMAADCVLCG
ESVIRLIDAPFTVEDDLEAFNAID
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcctcgaccaatatgaaaaagctagcaagcaggctggaacgacggtattt
atcaacacgctcttggaaaatgaacggcctatgttcgcaaagcagaaagtggcctatacg
ccccaatatcccgttcatcacatgggcgctcaatcgggtcgcatagcattagttctcgtc
aacaacaccctattgagaatagatacccaattacctgacaacattgatgagcttgatctc
aacaaaaacctgacggttggctacaaaatacaaaggttgtttgttgatcctactggctgc
cacatcctagttagtgctgtgcacaaggacagggaaagagacccagaacgggaagataac
aatgcagagctaatctacgttcatgctaactcagcaaaaccacggcaggtgacaaaaacc
aaaggaaatttcataacggcagttggatggtgcacatccaacattggtcaaactactggt
cctattcttttgggaacttctaagggcttcatctatgaaacagaaatcaatcagagtgga
aatgaaatatactggaaacaagtctttgatcttggacgaggaacacctacaatgattact
ggcttggaatattttcggttgcgttcagcaggagaaggccaatccgtctatggggtactg
ataactaccatgacaaaactataccaatttcaaggcaatctcatgaatcggatggatgat
agacccttattgcaatctatttttcacgcctatctcaatactaaagaaaaattcctcgaa
attccgagtgaattcgccgtgtcccgcttgcggctttgttttgccaacgaccagccgact
caagttgcatggatgacaggcaatggggtcctcttagcacaggtatcagacaaggacggc
gttctgagcccgcagcaccgaatgattccttacccactgcccgacacgtcgtcagaacca
tcggaaatcagcaaaaaacgcgggcatcacaagttcccattagaagtggccctaaccccc
tttcatttagccatggttttttacgatcgtctacgcataatctgtaccgttaatcagcag
ctggtttacgaggacacttacgatcagagttttggagatcttcgcggtttaacttgcgac
ggacggaataaaaaaaatcaacaagggcccgtgttgtggtcgttcgccgactacgctctt
tttcgttatacgatcaccgacgaatcccgccacatttggcagatgtacatggagcaaaag
caattcgacctagcgttgcaattttgtggaaacaacgccagtcagcggtcgcaagtcctt
ttgcaccaggcccatcatcttctcagtaaacaccagtacgagaaagcggccaagctctat
gcacagacagaagcttccttcgaagaggtggctctcaagtttatggaaatcaagcaagaa
gatgctctacaggcttttttgttagagaaagcatcacgattgaaaggagatcaacggatg
caactttctatgctagttctgtggctgctggagctgatgctccgcaagctcggttcgctc
aaagatgctggaatcaagacggacagtccacagtatcaaagcagctgggacacactcaat
cgttttactgagcaaaggcgtatcatggagtgtatcaaatcaaatcttggagccgtatat
agcttgttgtcaagccatgggctgcacgatgtaatgctccacttggccggcaagctcaaa
gatagccaacggattatggaacaacatttactcgatcgcaactacaaagaggccctaaac
gtcctgttggaatcttccgattctgaattgctttacaacgcctgcccggttttgctacaa
gagcagcccaaagaaacagtggacatgttgatctacaaagcgcataagctggaactcacc
cgagttacgccgcttctctttgccgcgttgtcagacggggacacccgcttagccaaagag
ataatacgtttcgttgagcattgcgcttaccagcttaactgtaaagatcgctctttacat
acgctgctattctccttgtacattcgatacgatccggataaaaccttaccttacctgaac
ggacaaggtgacgatgtcaagacggttccctacgatgcccagtcggcgttacgattatgc
ttggctgctgacaccagacaattacaggcttgcgtcttgctgtatcgtataatggggctt
tatcaaccggccgtggaaatggctctcaaagtggacgcggcgttggcgcgtcagacggcc
gacatgccggaagaaaacgaagagctacgcaagaagctttggctgcgtattgccagacac
gtagtggaaaaagaacgcgacattcaacgggccatggctgtgttacagcagtgcaacctg
cttaaaatagaagacgtcctacctttctttcccgactttactaccatcgatttgttcaaa
gacgcaatcagccaatcgcttcaagagtacagtcatcatttggatacgctcaaagaagag
atggaagaggccaccaaagcagccgacgctttgcgtcatgagattcaagctttccgacac
aaatcgattgtcgtacagacaggagaccactgccatttatgtcgttccccgcttctaact
agatcggcttacctgtttccttgcggccatcgcttccacggtgattgtcttctacctcga
gtcttaacgaccatgagccaaatgcgaagagaacgcgtagctgaactccaaagagagctg
gcctccttgcctaataacgatgcagattccttgtcgctagcgtcgtcttcactcggtaca
cgtgagcagttgctgcaggatctggatgacatcatggctgcggattgtgtcctatgtggc
gaatcagtcatcaggttgatagatgcaccgttcacagtggaggatgaccttgaagcgttt
aatgctattgattga
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integrated database retrieval system
