Daphnia magna (water flea): 116917728
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Entry
116917728 CDS
T07514
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116917728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116917728
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
116917728
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
116917728
NCBI-ProteinID:
XP_032779213
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Position
LG1:complement(18070161..18072488)
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AA seq
535 aa
AA seq
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MFTLTIMADQEASYPARHSDEADNSNSQFPDSSEQLPDDYGEDGKGEQDIAGNGEIYEIE
NEDHIAIERNMEFTREGYDHVESEENNEEKEERQYDGQENEEDEEDESDDDVQITIGDIK
SGPAAYTGFNVKRGALGTAAQGLGEKSKFTVDEFEGSMAINGVPAHEFSLDSLEDKPWRK
PGADITDYFNYGFNEITWQAYCERQRRSRMESGAGVPASLGLGPPPKMMAAPAQAIPISV
VNENSKYAGSVVVKKAGPPPARKMAGAIDVIGGGNLSSRRPESGVSPAPSMEEQPEVVVE
APIEKPPVSIDFSRPPPGFPNMALPPPFGMPPPVIPPPMMLPPPPIVPDPYANEFMAGPG
APGDDYYQYEPTQDSQWGSSDWRGPPPMGIPLPMGMNPPGKQRRESLGTPPVPGEESRLN
TSGSRRRRSRSRSPKDEREKEKDVEKDRGKERDRDRDRDRDRDRDKRERRSDKDKDRASG
RDRERDRDRDRSDRDRSDRRRRHRGSKSRSRSPTSHKRSSKRSKRDRSKSKSSSD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtttacactcacaataatggccgaccaggaggccagctacccggcccggcactcagac
gaggcagataattctaattctcaattcccggattcctcggaacagttaccagatgactac
ggagaagatggcaaaggtgagcaagacatcgccggcaatggagagatctacgaaattgaa
aatgaagaccatattgctatcgaaagaaatatggaattcaccagagaaggctacgatcat
gtggaatcagaagaaaataatgaagaaaaagaggagaggcaatatgatggtcaagagaat
gaagaggatgaggaagatgaaagtgatgatgatgtccaaatcacaatcggtgacataaaa
tctggtccagcagcttatactggttttaatgttaaaagaggagcacttggaacagccgca
caaggattgggagaaaaaagcaaatttactgtggatgagtttgaaggctcaatggcaatc
aatggagtacctgcacatgaattcagtttggactctttagaggataagccttggaggaag
cctggtgctgacatcactgattattttaattatggtttcaacgaaataacgtggcaagcg
tactgtgagaggcaaaggcgatctcggatggaatctggagctggtgtgccagctagcctt
ggattaggtcccccacccaagatgatggctgcccctgctcaagcgataccaatatcagtg
gttaatgaaaattcgaaatatgcagggtcggtagtagtgaaaaaagcaggtcctccacca
gcacgcaaaatggcgggtgctatcgatgttattggtggaggtaatctctcatctcgtcgc
ccagaatcaggcgtttctcctgcgccgtcgatggaagagcaaccggaagtggtggttgaa
gctcctatcgaaaaaccaccggtctcaatagatttctcacgtcctcctcccggtttccca
aatatggccctacctccgccatttggtatgccaccaccggtaattcctcccccaatgatg
ttaccaccgccacctatagtacctgacccttatgccaatgaatttatggctggtccgggg
gcacccggcgatgactattaccaatacgaacccacgcaggattcgcagtggggttcttca
gattggcgaggaccaccacccatgggaataccacttccaatgggcatgaacccaccggga
aagcaacgaagagagagcctagggacccctcccgttcccggagaagaatctcgcttaaac
accagtggcagtcgaagacgtcgctcacgaagccgttctcctaaagatgaacgtgaaaaa
gaaaaagacgttgaaaaggatcggggcaaagagagagacagagatagagaccgtgataga
gatcgagatcgcgacaagagggaacgtcggtcggataaggataaagatcgtgcaagtggc
cgtgatcgtgaaagagatcgtgatcgtgatcgcagtgatagagatcgtagtgatcgcaga
cgacgtcaccgtggcagtaaaagtcggagtcgaagtccgacgtctcataaacgctcttcg
aagcgctcgaaaagagacaggagtaaaagcaaaagctcgtcggattaa
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