Daphnia magna (water flea): 116917764
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Entry
116917764 CDS
T07514
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116917764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116917764
03041 Spliceosome [BR:
dmk03041
]
116917764
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116917764
Spliceosome [BR:
dmk03041
]
Complex B
Other components
Prp19-related factors
116917764
Complex C
116917764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_8
TPR_2
TPR_15
Mad3_BUB1_I
ARM_TT21
TPR_12
TPR_10
NRDE-2
PPR
ARM_TT21_C
DHR-2_Lobe_A
TRPM_tetra
Motif
Other DBs
NCBI-GeneID:
116917764
NCBI-ProteinID:
XP_032779249
UniProt:
A0A0P5PSF9
LinkDB
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Position
LG1:18072652..18076073
Genome browser
AA seq
851 aa
AA seq
DB search
MDKPIGRKAGDIVLCEEDLAYEEEILRNPYSVKHWLRYCVFKKDAPPSVVNLIYERALKE
MPGSYKLWYSYLCLRRKQTKGRCITDSCYEDANNAFERALVFMHKMPRIWMDYCKFLTHQ
QKITTTRKVFDRALRALPITQHSRIWPLYLKFVKMHPIPETAVRVFRRFLKLSAEDAEEF
VDYLKSIDRLDEAAVKLAQIVNKDSFTSKTGKSNHQLWNELCELSSKNPKQIKSLNVDAI
IRGGLRRYTDQLGQLWNSLADYYIRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELNLSHLMEEIGEKTNPTDDDDIEVELRMARFEDLMDRRPLLLNSVLLRQNPHNVAEWHK
RVQLYEGKPHEVINTFTEAVQTVDPKQAIGKVHTLWVDFAKFYEKNNQIEDARIVFEKAT
QVKYVKVDELATVWCEWAEMEIRNANYKEALKLMHRVTTPPARKVDYHDDAELVQTRVHK
SLKIWGLYADLEESFGTFKTCKAVYDRILELKIATPQIIMNYAIFLEENNYFEEAFKAYE
RGVSLFKWPNVYDIWNTYLSKFLKRYGGSKLERARDLFEQCLEGCPNKFAKTFFMLYAKL
EEEHGLARHAMNVYERATKAVPANERFDMYNMYIKKASEIYGVTKTRSIYERAIEELPDQ
QAREMCLRFADLERKLGEIDRARAVYGHCSQMCDPRVAPEFWRVWKEFEIKHGNEDTMRE
MLRIKRSVQATYNTQINMMSAQMLAAATNTAEAAAASQDSMKMLDVEESRPPVPVAKSLA
RPGSNIMFVRSETQPGTSTEEVPVASNPDEIDIDEDGEDDEEEEATIEEQQVPRQVFGSL
KKDDEDEEDAQ
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggataaacctattgggagaaaggcgggagatattgttttgtgtgaggaagatctagct
tatgaagaagaaatcctgcgaaatccatattctgtcaaacactggcttcgctattgtgtg
ttcaaaaaagatgcaccaccttccgtcgtaaatttgatttatgaacgagcattgaaagaa
atgcctggaagttacaaactatggtatagttatctttgcctacgaaggaagcaaactaag
ggtcgctgtataacagattcatgttacgaagatgcaaacaatgcattcgaaagagctttg
gtattcatgcacaagatgcctagaatatggatggattactgcaaatttttaacacaccag
caaaagattaccaccacaagaaaggtctttgatcgtgctctcagagccttgccaataacc
cagcattcccgaatctggccactttacctgaagtttgtcaaaatgcaccctatacctgaa
acagctgtacgtgtctttcgtcgttttctcaaactctctgctgaagacgccgaagaattt
gtcgactacttgaaatctatcgatcggctggacgaagctgcagttaaacttgcccagatt
gttaacaaagatagctttacttccaaaactggtaaatcaaatcatcagctctggaatgaa
ttgtgtgaacttagttcgaaaaatccaaagcaaatcaagagtcttaacgtggatgcaatc
attcggggaggacttcgtcgttacaccgatcaacttggacagctttggaattcgctagct
gattattacatacgaagcggtctatttgaaagagcacgagatatttatgaggaagctatt
cagacggttacaaccgtacgggactttacacaggttttcgatgcctacgcacagtttgaa
gaactgaatctgagccatctcatggaggagataggtgaaaaaactaaccccacagatgac
gatgatatcgaagttgaattaaggatggctcggtttgaggatttgatggaccgccggccc
ttgctgttaaactctgttcttttacgtcaaaatccacataatgttgccgagtggcacaag
cgagtccagctttacgagggcaaacctcacgaagttattaatacttttacggaggcagtt
cagacagttgatccaaaacaggctatcggtaaagttcacacgctgtgggtcgacttcgct
aaattttacgaaaaaaataatcaaattgaagatgcaaggatagttttcgaaaaagccaca
caggtgaagtacgtaaaagttgatgaattggcaactgtttggtgcgaatgggctgaaatg
gagatccgaaatgctaactacaaagaagccctcaagctaatgcatcgtgttactacacct
ccggcacgcaaagtagattaccatgatgacgctgaactagttcaaacccgtgtccataaa
tctttgaagatttgggggttgtacgcagaccttgaggagagctttggcacttttaaaacg
tgcaaagccgtgtacgatcgtattctggaattgaaaattgctactccacaaatcatcatg
aactatgccatctttctcgaagaaaacaactatttcgaagaggcctttaaagcctatgaa
cgtggcgtttctcttttcaagtggcctaacgtctacgacatatggaacacttatctttca
aagtttctgaagcgctacggtggctcgaagttagaacgagcgcgagatctttttgagcag
tgtttggaaggttgccccaataagtttgcaaaaaccttctttatgctttacgccaaattg
gaagaggaacatggactagctcgtcatgccatgaacgtttatgaaagagcaacgaaggct
gtcccggccaacgaacgttttgacatgtacaacatgtacattaagaaagcatctgagata
tacggtgtgaccaaaacgcgcagcatatacgaaagagccatcgaagaattacccgatcaa
caggccagggagatgtgcttgcggtttgccgatttagagcgcaagttgggtgaaattgac
cgggcgcgagctgtttacgggcattgcagccaaatgtgcgaccccagggtagcgccagaa
ttttggagggtttggaaagagtttgaaattaagcacggcaacgaggatacgatgcgtgaa
atgcttcgaatcaaacgtagtgtacaggcaacatataatacgcagatcaacatgatgtca
gctcagatgttagctgcggctaccaacactgccgaagcagccgctgcttctcaggacagc
atgaaaatgctagatgtggaggaatctcgaccgccagtgcctgtggccaaatctcttgcg
cgtcctggaagcaacatcatgttcgttcgaagtgaaacacaacctggcacctcaactgag
gaagttccagttgcaagtaaccctgacgaaatcgacatcgatgaagatggggaagatgat
gaggaagaagaggccaccatcgaagaacagcaagttccacgtcaggtctttggtagtttg
aaaaaagatgacgaagacgaagaagatgcccagtaa
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