Daphnia magna (water flea): 116917906
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Entry
116917906 CDS
T07514
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116917906
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116917906
Spliceosome [BR:
dmk03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116917906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
DEAD
OB_NTP_bind
R3H
AAA_19
nSTAND3
HA2_N
AAA_22
Ank_2
ATPase
SRP54
PhoH
AAA_14
AAA_7
Ank_5
ResIII
Ank
Ank_4
T2SSE
Cas3-like_C_2
Ank_3
AAA_16
AAA_11
AAA_29
FtsK_SpoIIIE
AAA_23
TsaE
Motif
Other DBs
NCBI-GeneID:
116917906
NCBI-ProteinID:
XP_045026094
LinkDB
All DBs
Position
LG2:5205879..5211932
Genome browser
AA seq
1413 aa
AA seq
DB search
MAFARNKNGRGNSKHHIYESVKKGLDTLLKSFRDDDSSTEYTFSSTLSTEERAYIHACAP
TMGMISRSQGKGSERKLTVKKIAIFAKNQISKLNIHPNTVARATQLLQEFPLTAEELLDV
LPLENQATRCTTDKQTHADCIKYHMPIIPQPLKASALIAERKSLPTWSHREEILNMISKN
KVVMITGDTGSGKTTQVPQYLLELFSERNEPVRIICTQPRRIAAISVAERVANERGEQLG
GTVGYQIRLESRMSSKTALMFCTTGILLRTLMYQEGNLERVTHLIIDEVHERDRFVDFLL
GVLKSRLPRLPNLRLILMSAALDISVFSNYFSSCPVMHVQGKCFPVTEYFLEDVLELTDH
LGHSSPLEIGVWEESEIKSTETKIVGISREGQAPRTSKLEKNNPCVLDSGARLTFDCWIQ
EAFIIENADAMEKLCKAVMRTHLPVNYRHSQTRLSPLMVAAARGRLDLVNSFLQFGADPA
QTAGQWTAAKLARSMHHHTVADFLEKYQSEKAESLLRIYKDRHDEEAVNVDLVLDVLHLI
EQQSSEGAVLIFLPGYEEIMNIRDRIMYNDSRFAASGKFEVYTLHSSMQSGDQRRVFFRP
PSGKRKIVLSTNLAETSITIDDIVFVIDTGKVKVKSFDAVTGVSALKAEWVPQASAIQRK
GRAGRCREGICYHLYSRQRYELFEKYQIPEIFRVPLEELCLQSKNLAPTGFSIAEFIGQV
PEAPKLHVIQRAVKMLQWMDALDPWENVTDLGRLLLELPVEPRAGKMLLTATVLHCLDPV
LTIVCCLSHRDPFLLPADPNEKKVAAARKLELAAGTLSDHMAMLRAFNLWLGARGFPRKE
RDFCHRYFLSSATMEIIHQLRIQILDQLRKSGFVRSLQELNRNASSWVAIKACILSGLYP
QVARACGSGKLTTRREPSVRLHMTSALLGENGNASQKKAISQLPSKWMVYEEISRYGGLV
ASLRCVTLVNTVALAIFGGHCRLSSESLKDPVLSSESENGDDDDDDWTTDDASEESEDID
DALLKELSEGLHDLELAEKFSHSPLPDERNFKQKKKNISKAKSEFHLDEWICLKMETNAA
HHLFAIRQKWQALFARRMRDPIGAELEGDKQVLDALLSILSKEEEASGLPPSPEFLGIAE
MRRLHKSDDFGIYRQPNSRPNNINPVLESKNNYMPNPRLHSMPNSWRSNQRSTIVSDDNF
DQNSRPNSARNANGPYHMNRIDPFPKGFKGKDLGNLRYKTGNADMNFMTRSSVPQSGGNL
ANQERGQWSRNGTNRATHIHDNGASASNKEWRNEVDVGNKNGFNSKAKPKNQFTAGYGNA
NQTPNFPRDRLPPRLERRAGKIPSESQTNKHQPDQSKRIVPKENAQGYFQRQAKERGTDV
LNQEPNANIQLSKRRKRPQKRKETNVALPPTPF
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgccaggaataaaaatggcaggggtaattcaaagcatcatatttatgaatca
gtaaaaaaaggacttgatactctgctgaagtcatttcgtgatgatgactcttctacagag
tatacattttcatctactctttccactgaagaacgagcatatatccatgcttgtgcacct
acaatgggaatgatatcgagaagtcaagggaaaggaagtgagaggaaattaactgtaaaa
aaaatagcaatttttgcaaaaaaccaaatttccaaattgaacattcatcccaatacagtt
gcaagggcaacccaactactccaagagtttcccttgactgcagaagaactgctagatgta
ctgccactcgaaaaccaagccactaggtgcaccactgataaacaaacccatgcagattgc
ataaaatatcatatgccgatcattccacaacctttgaaagcctctgctttgatcgctgag
cgaaaatcccttcctacttggagtcaccgtgaagaaatcctgaatatgatatcgaaaaat
aaggtggttatgattactggtgacacgggatcaggaaaaacgacacaagttcctcagtat
ctgttggagctcttttcggaaagaaacgagccggttcgtataatatgcacacagccacga
cgaattgctgcaatctcggtcgctgagcgagttgccaacgaacgtggagagcagttggga
gggacagtgggctaccagatccggcttgaaagtcggatgtcatctaaaactgcactgatg
ttttgcaccaccggaattctcctccggacactgatgtaccaagaaggcaatctggaaaga
gttacccatttgattattgatgaagtgcatgaaagagatcgcttcgtcgatttcctgctt
ggagtactaaaatcgcggctccccaggctgccaaatttacggcttattctaatgtcggcg
gctttagacataagcgtcttctccaactactttagcagttgtccagttatgcatgtacaa
gggaaatgttttcctgttaccgagtactttctggaagatgttttagagctgactgatcat
ctcggccattcgtcgccattggaaatcggagtgtgggaagaaagcgaaataaaaagtaca
gaaacaaaaatagttggaatatcccgtgaagggcaagcgccgcgaacttccaagctggag
aagaacaatccatgtgttctggattcgggtgcccgattgacatttgactgctggatacag
gaagcttttataatagaaaatgccgatgcaatggaaaagctctgcaaggcagtgatgcgt
acacatttgcctgtgaattatcgccattctcaaacgcggctttctccactcatggttgcc
gccgcccgaggacgtctagatttggtgaacagctttttacagtttggcgctgatccagcc
caaacagctgggcaatggacagcagccaaattagcgcgttcgatgcaccatcataccgtg
gccgattttttggaaaaataccaatcagaaaaagcggaaagtttgctacgaatctacaag
gatcgccatgatgaggaagctgtcaatgtcgatctagtgttggatgtgctccatctgata
gaacagcagagctccgaaggggcagtactaatctttcttcccggatatgaggagatcatg
aatattcgtgatcgtatcatgtacaatgattctcggttcgctgcatcgggaaagttcgag
gtttatactctgcattcgagtatgcaatctggcgatcaacgaagagtcttctttcgccca
cccagtggaaaacgcaaaattgttctatctacgaacctcgctgaaacgagcatcacaatt
gatgatattgtatttgttatcgataccggcaaagtcaaagtcaaatcttttgatgcggtt
actggtgtgtcggcattaaaagccgaatgggttccacaggcttcggccatccaacgcaaa
ggaagggcaggtcgttgcagagaaggaatttgctatcatctctactcccgtcaacgctat
gaattatttgagaaataccagatacccgaaatttttcgagttccactcgaagaactatgt
ctccaatctaaaaatttggcacctaccggtttttccattgctgagtttattggccaagtt
ccagaagctcccaaattgcacgtaattcagcgagccgtcaagatgttacaatggatggat
gctttggatccttgggagaatgtaaccgacctcggacgattattgctggagttaccagtt
gaacctagagctggcaaaatgctgcttactgctacggtgcttcattgtttggatcctgtt
ctgacgatcgtctgctgcctcagccaccgagatccttttctcttgccagctgatcccaac
gagaaaaaagtagctgcagctcgtaagcttgaactagctgctggaactctcagcgaccac
atggccatgcttcgggcttttaatttgtggttgggtgcccgcggtttcccccggaaagaa
cgagacttttgtcatcgttactttttgtcatcggcaacaatggaaattatccaccagtta
cgcatccagatcttagaccagttacgaaaatcgggtttcgttcgcagtttgcaagaactg
aacagaaacgcttctagctgggttgcaattaaagcatgcattctctctggtctctaccct
caagtggctcgggcttgtgggtctggtaagttgacaacccgtcgtgaaccctcggtgcgc
ttgcatatgacatcggctctcttgggcgaaaatggcaacgcatctcaaaaaaaggccatc
agccaacttccaagcaagtggatggtctacgaagaaatatcaagatatggtggacttgtg
gcttctcttcgttgtgttactttggttaatacggtagcattggctatatttggcggacat
tgtcgcttgtctagcgagagtctgaaagaccctgttctttcgtccgaaagcgaaaatggg
gatgacgacgatgatgactggacgactgacgacgcttctgaggaatcggaggacattgac
gacgccctcttgaaagaattgagtgagggcttacacgacttggagctagcggaaaagttc
agtcattcacctctgccggatgaaagaaatttcaaacaaaaaaagaaaaacatctcaaag
gcaaaaagtgaatttcatcttgatgaatggatttgtttgaagatggaaactaacgctgct
caccatttgtttgcaatacgccaaaaatggcaggccctatttgctcgtcgaatgcgagat
cctattggcgctgaattggaaggtgacaaacaagtattagacgcactcctaagcatcctt
tcaaaagaagaagaggcatctggtctaccaccttctcccgaattcctaggcatcgccgaa
atgcgacgtctacacaaatccgatgacttcggcatctatcgccaacctaattcccgacct
aataatatcaacccggtgttggaatctaaaaacaattatatgcccaaccctaggctccat
tcaatgccaaactcatggcggagcaaccagcgttccacaattgtttcagatgacaatttc
gatcaaaattcacgtcctaattcggcccgcaacgctaacgggccctaccacatgaatcga
attgacccgtttcctaaaggctttaaaggcaaggatcttggaaatctgagatacaaaact
ggcaatgcagatatgaatttcatgacgcgttcatcagtaccgcaaagtggaggcaacctc
gctaaccaagagcgtgggcagtggtcgagaaacggcacaaatcgagccacccatatacat
gacaacggcgcatcagcttctaataaagaatggaggaacgaagttgatgtgggaaacaag
aatggtttcaactcgaaagccaagccgaaaaatcagtttacagccggatatggcaacgca
aatcaaacgcccaattttcctagagatcgactaccgccgaggctggaacgacgtgctggc
aaaattccatcagaaagtcaaacgaacaaacatcagcccgatcagagcaaaaggatcgtt
ccaaaggagaatgctcaaggttatttccagcggcaagccaaagaaagaggtaccgatgta
ctgaaccaggaaccaaacgcgaacattcagttgtcgaaaaggagaaaaaggccacagaaa
cggaaagaaacaaacgttgccctcccgcccaccccattttaa
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integrated database retrieval system
