Daphnia magna (water flea): 116918285
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Entry
116918285 CDS
T07514
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116918285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116918285
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116918285
mRNA degradation factors
5'-3' decay
Decapping complex
116918285
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WDR55
tRNA-synt_2b
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_HPS5
HEAT_EF3_N
Dimeth_Pyl
DivIC
DUF2205
MCR_C
Motif
Other DBs
NCBI-GeneID:
116918285
NCBI-ProteinID:
XP_032779847
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Position
LG3:13039170..13044293
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AA seq
1196 aa
AA seq
DB search
MSCSFNGQRSKDDELTIMFSEAMDWQSVATKSSEDVIIYPVNGGHRSGSSQIKVKNIVDS
SWDKAFHWGNLVATHYKGQYFAYALTVPGKSAGMVRVIRSGSSDRILLKGFHGFVRDLSF
AFHEKRILVAAVDEYSYLLVHEIVGSTAQLILQVNPDGITTSSDCHRVVWCPYVPENPKS
LDEANDGWRNDADDHALMLASSHECRVEIWHLGHINGTVTYPSVTTGATQITSFDDAVVD
IAFSPDSTAIAVASLDGYVRFFLVNTKKEDPKSLHKWQPHEGKRLSGIIFLDNLSHPNIR
ECPLWKWAVTSAENNTEFKLWSCELWKCHQTIRFKSDDNTPIVQKMTLDLSASYLVISDI
HRKALYVMHIEQEQDEKHALSDDGVDDSLKTEAPTVSKVSSITQLLLPFSAISVAIREAS
IRPPSQPMGDEDFDGDEKATKVIVKMLIVQPKSLQKCKAVFELGTSVPLGEGIGTSFSTI
NTTSEYEPVNVVKTAASTTNHINLLTPDAFVSPAKTNTDSQKQSLVTSPVTVSPLPPAPN
EILALSSPRRPTPEVTSSTTPKRNGIPSGGSSPSREVEEILGTRPLTEGSIESPDTSSAT
VPTGPALQDALSAYPIALSPALVRTASANSKGSSPIMDKPNAPSVQEPLCTYPTSAVAAP
STPSSISADLNGSLLELFKEVLVVEPQASTAQPTWPSVLPPLGIQPLQRPKEPVARETDA
GNSAQLQMMQQSLDQLVQLVSAQRAEQQQLKNEIGQLKSEMTRMQSPATVQPSWIAQMES
TLAVYFDRQLKKLDEINSPSKTQQSVSKLQSTIRSEFENKAHTLEQRSVDFIRKELQSVI
ASEMNKLEPVLKNTTLQLLTQLSQNKTIVDAYSQATSSAAVSAMNRGCKEAIASQLLPSL
EGSFHSLFTQLHTTFSKGIAECEHSIRNDYSEKICITRHFNTNNVIYPVVRNIESNLERH
RRLQDKESTAQLNATMDKIAVVLDQVRQSISTDTKTELKKISNEFPEKVRMLLTPVIQSE
MQLAIKDQKLALDGAMMAVHAAQIQSRAVTPAVVELTPAELQIQLKHMIHEGRLFEAFQR
ALYMNDLSMVMFVCARVDAQKLFSVHPCVFPPQILLALIQQLSADLGTSTELKLEYLQEA
VMAVNFRDPQIKEHAPKVMPQLVANLQAQIANNPSGPLQRQLRLLLRCAVPLTKPE
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtagttttaacggccaaaggagcaaagatgatgaacttaccattatgttttca
gaagctatggattggcaaagtgttgcaacaaagtcatcagaagatgttattatttatcca
gttaatggaggacatcgctctggtagctcacagatcaaagtaaaaaacattgtagattca
tcctgggacaaggcattccactggggaaacctagttgccactcattacaagggccaatat
tttgcatatgccctaactgttcctggtaaatcagctggaatggtccgtgtaataagaagt
ggaagcagtgatagaattctattaaaaggattccatggctttgttagagatctttcattt
gccttccacgaaaaaaggatacttgtggcagctgtcgatgaatatagttaccttttggtc
catgaaattgttggatcaactgctcaattgattttgcaagtaaatcccgatggaattact
acttccagtgattgccacagagtggtatggtgcccttatgttccagaaaatcccaaaagt
cttgacgaagccaatgacggttggcgaaatgatgccgatgatcatgcattgatgcttgca
tcatcacatgaatgtcgtgtggaaatatggcatctgggtcacatcaatggcacagtcact
tatcccagtgtgacaaccggagccacccaaattacttctttcgatgatgctgtggttgat
atagcattttccccggactcgactgcgattgcagtcgccagccttgatggctatgtcaga
ttctttttggtgaatacaaaaaaagaggatcccaaaagtctgcacaaatggcaacctcat
gaaggcaaaagactatcgggtatcatttttttggataatttaagccatccaaacatcaga
gaatgtccattgtggaaatgggctgttacatctgccgaaaacaataccgagttcaagcta
tggtcctgcgagttatggaaatgtcatcagaccatccgtttcaagtcggatgataacaca
cccattgtccaaaagatgacacttgacctgtcagcatcctaccttgtcatatctgatatt
catcgtaaagccctttacgtgatgcacatagaacaagaacaagacgaaaaacatgcattg
tctgatgacggtgttgatgattctcttaaaaccgaagcaccgaccgtctctaaagtgagc
agcatcacccaactattgctaccattttcagctattagcgttgccatccgtgaggcctcc
ataagaccaccttcccagcccatgggcgatgaagatttcgatggagacgaaaaggctact
aaagtaatagtgaagatgttaatcgtgcaacccaagtcgttgcaaaaatgcaaagccgtc
ttcgaattgggtacctcagtccctttgggcgaaggcattggaacttcattctccacgatc
aacacaacttcagagtacgaacctgtaaatgtagttaagacagcagcatctaccaccaat
catatcaacctgttgacgcccgatgctttcgtttcaccggccaaaacaaacactgactct
cagaagcaatcattagtgacatcacccgtcacggtgagtcctttaccacccgcacccaac
gaaattttggcactgtcgagcccacgccgcccaacacctgaggtcacctcctccactaca
ccaaaacggaacggtatccccagtggaggtagcagtcccagtcgtgaagtagaagaaatc
ttgggcacaagacctctaacagaaggctccattgagtcgcctgatacttcttcggccact
gtccctaccggcccggctcttcaggacgccttatcggcctatccaatcgctttatcaccg
gctttggtgcgtacagcctctgccaacagtaaaggatcttcccccataatggacaaacct
aatgcaccatctgttcaggaaccgctatgcacttaccctacttccgctgttgcagctcct
tctactccctcttccatatctgcggatttaaacggcagtttgctggaattgtttaaagaa
gtccttgtcgttgaaccgcaggcttcgacagcacaacccacatggccatccgttcttcca
ccgctgggcattcagccattgcaacggcctaaagagccagtagcacgtgaaacggatgct
ggaaactctgctcaattgcaaatgatgcagcaatcgctcgatcaattggttcaactggta
tcagcccagcgagctgaacagcaacaattgaagaacgaaatcggccaattgaagtcagaa
atgacgcgaatgcaatcacccgcaactgtccagccgtcctggattgcccaaatggagtct
acccttgcagtttatttcgataggcaattaaaaaaattggatgaaattaattctccgtcc
aaaactcagcagtcggtgtcaaaactccagtcgaccatccggtcagagtttgagaataaa
gcgcacactttagagcaaaggagtgtcgactttattcgcaaagaattgcagtcggtcatt
gcgagcgagatgaacaaactggaacctgttctgaagaacacaacgcttcaattactgacg
cagttgtcgcaaaacaaaaccatcgtcgatgcctacagccaagcgacttcttcggcagcc
gtatcggccatgaatcgcggatgcaaggaagccattgcatcgcagttgcttccgtcattg
gagggctcattccacagtcttttcactcagttgcacaccactttctccaaaggcatcgca
gaatgtgagcattcaattagaaatgactattcagaaaagatttgcatcacacgtcatttc
aatacaaataacgttatctacccagtcgtgcgcaatatcgagagcaacctggaacgacat
cgaaggctgcaggacaaagagtcgaccgcccaactcaacgctaccatggataagatagcc
gtcgtcctggatcaagttcggcaatccatttcaaccgatacaaagacggagttgaagaaa
atatctaacgaattcccagaaaaagtacgaatgcttttgactcctgtgatccaatccgaa
atgcagctcgccattaaggatcagaaattggcgttagacggagccatgatggcagttcac
gcggcacaaatccagtcacgcgcagtgacgcccgcagttgtagaactaacgccagccgaa
cttcaaatccaattgaaacacatgattcacgagggacgattattcgaagcttttcaaagg
gcgctgtacatgaatgacttaagcatggtgatgtttgtttgcgctcgagttgatgcgcag
aaactcttttcggttcacccatgtgtctttccgccacagatcttgttggctttgatccaa
cagctttcagcagatcttggcacatcgacggaactgaaattagagtatcttcaagaagcc
gtcatggccgtgaactttcgagatcctcagattaaggagcacgcacccaaggtgatgcct
caactagtggcaaacttgcaggcccagatcgccaacaacccaagtggtcctttacaacgt
caattgcgtttgttattgcgttgcgcagttccattgaccaaaccggaataa
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