Daphnia magna (water flea): 116918423
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Entry
116918423 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116918423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dmk03009
]
116918423
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
Pre-60S particles
RNases
116918423
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
REX3_middle
RNase_T
CHORD
Motif
Other DBs
NCBI-GeneID:
116918423
NCBI-ProteinID:
XP_032780023
LinkDB
All DBs
AA seq
1094 aa
AA seq
DB search
MLPSVGYFKSIVCPYFENESCERPYCQFRHEHLPVRPAKPTVVLRTHDPGPSQGTQEGGN
SSAIEQIVSEAVKRVLKENGQLLENFDASKIMELVGQQKLVEKVVENLAPPSSPKKIDGN
SKESSHKSKNHKIYNIPVGTPAYTPTPIAVLKKTMTIPSKVENYEPSKSSTTGCVATYKP
SSKVASKSEETYVPTALESTSIPSRVDNYVPRNSSTSSTATYKPSKRVSKSEEGYTPPST
LENMPDVNYTPSSRDSDNIISDRYTPPSNLDCDVDYQPTTRELISVEPSYSPSCSTFESG
IADYSPSSISTLSTEPSYSPAPTSGSVSLDVDYTPSSLTSSQQLTPEKYLELFEDGEQPS
EAEEKKKHKSSKEEDRRKREKEKERERERERRRRKEKEREREKKKSRSSSDQDSKSKHSS
SKKSSSSSPRKSKSSDVKSSDSQKSESKSYESKSSKNEVEMESDSDVDEECYRIFKEYQP
STTXSSNGQNDDQKKRKSEDVPPVSEAIIPVKKQRVAHTSVEAPIRSSSLVPPKPAPRLT
PGMMMIDRYKAFQEAKTASASGAQSWPQHSSTSQRIAAPSSSSSSAEKKRIAHVPNVMGL
LTSKPKNTPAVTAPGLSVSSALPTGQQQPTAQQKAVGGNAFRRPVPNKTTTPTASTVPAV
KAPPPKLPRPMIAIELGCRVPANIRQKYLNILVDETLKIYDREEDAYERAVEEEKQSYAK
CSSRIVYANVITNVVQRIRKEAENSNNPTSANHNEKKTMSHSAVLAGKGGATVSWSIEKP
KSARIDSNLLRGSTLYKLMERYLLTLEQQDFNGYPRPDPSEKGRAIVNPINKFRTKPSVN
LAPDQRVCDRCNTIYKVNSKGLAVKEDDTCSYHWGKPFARRGETRYTCCKGEANSDGCSV
GKWHVSDTGSLLNLKGFVRTMAKTPPPDGNYGVYALDCEMCYTTEGPELTRVTVISSDCK
TVYETLVMPDNPILDHNTRFSGITEEDLLNVKTTIRDVQAVLLSKFSDKTILIGHSFDSD
LRALRMIHDTVIDTSVVFPHSRGPPYKKALRTLCGDILQKIIQNDVGGHDSAEDAIACME
LMMWKIKQDLKQLK
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgcttccgtcagttggttactttaagagtatcgtttgtccctatttcgaaaatgaatcg
tgtgagagaccatactgtcaatttcggcacgaacatttgcccgttcgcccagctaagcca
actgtcgtgctcagaacccacgatcctggcccgtctcaaggaactcaggaaggaggcaac
tcatcagctattgagcagatagtttctgaagctgtcaaaagggttctaaaggaaaatgga
cagcttttggagaatttcgatgcctccaaaatcatggaacttgtgggccaacagaaactg
gttgaaaaggttgtggaaaatcttgcccctccttcaagtcctaaaaaaattgatggaaac
tctaaagaatctagccataaaagcaaaaatcacaaaatctacaacatacctgttggaact
cctgcctatactcccacacctattgctgtccttaagaaaactatgacaattccctccaag
gttgaaaattatgagccttccaagtcttctactactggttgtgtagccacctataagccc
agcagtaaagttgcttccaaatcagaagaaacctatgtaccaacggctctggaaagtact
tcaattccatctagagttgataattatgtgcctagaaattcatccactagttcaactgca
acctataagcctagtaaacgtgtctcaaaatcagaagaaggttatactccaccctccacg
ttggagaacatgcccgacgtcaattacacaccgagcagtagagattctgacaatattatt
agcgatcgatacacgcctccatccaatctggattgtgacgtcgattaccagcctacaact
cgggaattgatctccgtcgaaccgtcatattcccctagctgttcgacatttgaatcggga
attgctgattattcccccagctcaatctcgacgttatccactgaaccgagttatagtcct
gcaccaacgagtggtagcgtttcattggatgtggactacacgccaagctctttgaccagc
agtcaacagctaacgcctgaaaagtacctcgaattgtttgaagatggggaacagcccagt
gaggctgaagagaagaaaaaacacaagagcagcaaagaggaggataggcggaaaagagaa
aaggagaaagagcgtgagagagaaagggaaagacgtcgacggaaagagaaggaaagagaa
agagagaagaaaaagagtcggtcaagctcagatcaagattccaaatccaagcattcaagc
agcaaaaagtcgagcagctccagtcctagaaaaagcaaatcgtcagatgttaaatcttca
gactcgcaaaagtcagaatcaaaatcatatgaatctaagtcatcgaaaaacgaagtggaa
atggaatcggattctgacgtagacgaggaatgttatcgaatattcaaggaataccaaccg
agtacgacgnnaagcagcaatgggcaaaatgacgaccaaaagaagcggaaatcggaagat
gtccctcctgtttccgaggccattattcccgtgaagaaacaacgggtagctcacacatcc
gttgaagctccgatccgatcatcgagccttgttcctcctaagcctgcaccacgccttaca
ccgggaatgatgatgattgatcgttacaaggctttccaagaggccaaaacagcctctgcg
agtggggcgcagtcttggccacagcattcttcaacgtcacaacgaatcgccgctccatct
tcttcgtcatctagtgccgagaagaagcgaatcgcccatgttcctaatgtgatgggctta
cttacttccaaacctaaaaatactccggccgtaactgcccctggtctgtcggtaagttct
gccttaccgactggccaacaacaaccaacagcgcaacagaaagccgtaggaggcaatgct
ttccggcgacctgttccgaacaaaacgaccactcccacagcttcaaccgttccagcagtt
aaagctccacctcctaaacttccacgtcctatgatagccatcgaattgggttgtcgagtg
ccggccaacattcggcaaaagtatctgaatatcttagtggatgaaacgctcaaaatatac
gatcgagaggaagacgcctacgaaagagcagtcgaagaagaaaaacagtcctatgcaaaa
tgtagcagtaggattgtctatgctaacgtcattaccaacgtggtgcagcgaatccgcaaa
gaggctgaaaatagcaataacccgacgtctgctaatcacaacgaaaagaagacgatgtct
cactcagctgtgttggccggaaaaggaggagccactgtgtcttggagtattgagaaacca
aagtctgctaggatcgactcgaatctattaagaggcagcacgttgtacaaattgatggaa
cgatatctcttgactcttgagcaacaagatttcaatggctatcctcggcctgatcccagt
gaaaagggtcgtgcaattgtcaatccgattaataaattccgcacaaagcctagtgtcaac
ctcgcacctgatcagcgcgtttgcgatagatgcaatacaatctacaaagtcaatagcaaa
ggcctagcagtcaaagaggatgatacctgttcctaccattggggcaagccttttgcacgt
cgtggggaaactcgttatacctgctgtaaaggtgaagccaattccgacggttgttcagtg
ggaaaatggcacgtcagcgataccggaagtctgctcaatctgaaggggtttgtccgcacg
atggcgaaaacaccaccacctgacggcaactacggggtctacgccctcgattgtgagatg
tgctacacaacagaagggccagaactaacccgagtcactgttatctcatccgattgcaag
acggtttatgaaacgctggtcatgccggacaatcccattctcgatcacaatactcgattc
agtggaatcacagaagaggacttgctgaacgtcaagacgaccattcgagatgtgcaggcc
gtcttgctaagcaagttttctgacaagaccattttgatcgggcacagtttcgatagtgat
ttacgagccttgcggatgatacacgacactgttattgatactagcgtcgtatttccgcat
tcgaggggcccgccttacaagaaagctttaaggacattgtgcggcgatattcttcaaaag
attatccagaacgatgttggaggtcacgacagtgcagaagacgctattgcgtgtatggaa
ctaatgatgtggaaaatcaaacaagatttaaagcaactcaagtaa
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integrated database retrieval system
