Daphnia magna (water flea): 116918440
Help
Entry
116918440 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: F-actin-uncapping protein LRRC16A
KO
K20493
leucine-rich repeat-containing protein 16
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
116918440
Membrane trafficking [BR:
dmk04131
]
Others
Actin-binding proteins
Nucleation-promoting factors (NPFs)
116918440
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARMIL_C
Carm_PH
LRR_6
Motif
Other DBs
NCBI-GeneID:
116918440
NCBI-ProteinID:
XP_045026909
LinkDB
All DBs
Position
LG3:13513908..13521656
Genome browser
AA seq
1578 aa
AA seq
DB search
MALGDKKDTLTQDIHESVRNVLGKHVKITERRAVRMETKGDKMENRILVFTPCRLFVFTP
KIPTKIDFNLHYLDLQSIESKKLSQLTLSTMDKVYSFHTQEELNQTSDSLITAIVTAISD
LFPGIPIDQVVRRIEVSPVGRMENLSNLLRGSNSETELSIPCGNFSRQYACMCDYYGLPY
REEVAWDVDTIYMSHNSKELNLRDFDHLDPKDLIPIIAALELNSFFLQFRCSHLKLSHEC
SERLLAVLKKSTTLEEIYVDNAGFKGDFANKLSMAIISNSNSSLHGIDLSHNLIEDRGIT
SLCGFLAKARQGATHLSSSLSKAHRGLVKLSLSHCGLTGKGVAQIGHALVLNKCMASSLQ
HLDLSNNVAKDDINTICSFLAQPNVLTFLNLSSTDIALEPIFGALLRGGTTYLRHLDLSK
NYFSTKKGKELPPSFKQYFTSALALRTIILSHCKITPEALKNLLLGLACNESIDNVTLDL
SNNILGNGGCHVLESCIHGVRCVSTLDISDNGIDVEMAGVLLSISRNKSMKKLILNKNFQ
NMKSKHATTVIDAFVHLLQEEDCVIEALSLVDCKLKSELYSLINAVGSNQSLQHLDLNGN
YMGDPGARLLSKALQINTSLKALSIDRNSITVHGYSDIAYALESNRTLRCLSYPLHDIMV
AAKTGTDKVDILWKQIQEALQRNMSLIGPSPNGTSASVRSHQKGETTHNTSQNQLLDRLI
IQVNEAIRTLQRQGSEGRAGDIEIARNLLVDAHSAKELLGKLVSSVEVAQDNISLSSATK
PMVEELQALLTSHLQSIGDNLWHCALQHCNTVMSNSCVSDQLRKSIESQSFFPVSVIRKA
VMENATLQLTEKFDELSTALCRTVSENVMDEVVQSLTNIFKTLAGDSNVTLDCKKRSSTP
DVLKSRTRINSEMNTQRGEDESEDTIDQQSDRSPVLEYLNLATPVASKRRNLLSRKLRPK
STVGMGQGASADDIPDLVPPLNEQLSGIHHQGEDPDANEEEPGVNVDESQADVSRKSAPL
KHLGLSRPKKPKTRLPTRSAATLRVGNSETASQESLDVEGDLSQGLDTFFHTTTMATTTG
GSSVSLGSSRMRGSLGSVSSAELGSPSLESMSAESSPMHRSVAGDKLGEEVGSSSREELT
LDEDAVKSKEKRKSEDDLSSVTKEKRKDSGRGMGVRLLSSIFGKNPSPSPTGDGSPSPAP
SKSPVAKTKLASVTKEPESESKPVEDEAEPAVPKRSAVPSKLGIGVGGNVLAEMKARQER
RISGILHKQNSEESDFSERGMEKPEPNKANNLSPNPLGGIRLRPTPHTPEEQEPPKLPER
NNVRFIRPIGLEEVESDRNKPANPLTGFRLRHRGGADEPETAKLEDKSNALNQIRLRATS
TVVDDSPSPDPSGDAKANPLSGVRLRSTGINVTDPLKSPNNGDSNAENKSDSRNSLTKLK
PPPLAPKPRPWSIVGSDKKTDDIDAADAAKENDAKEAVKPSKVRAMAAAVNFNNSGSDVV
RRSNKHSHEEQDGLPVEFLESKDGEVEQAYGQDSLSSIAFLTNQQATLPXQQQQPLISQQ
SPASLILNNFSLEDAVDV
NT seq
4737 nt
NT seq
+upstream
nt +downstream
nt
atggccctgggtgataaaaaggataccctcacacaagatattcacgagagtgtcagaaat
gtacttggtaaacatgtcaaaatcacagaaaggagggctgttcggatggaaaccaaagga
gataaaatggaaaatagaattcttgtttttactccatgtcgactatttgtgtttactcca
aaaattccaacaaagattgattttaatctccattaccttgacttgcaatcaattgaaagc
aagaagctgtcccagcttaccttgtcaacaatggacaaggtatattccttccacacccaa
gaggaactgaaccaaacctctgattctctaatcactgccatagtcactgcaattagtgac
ttgtttccagggattccaattgatcaagtggtacgacgtattgaagttagtccggtaggt
cgaatggagaacctttccaatctccttcgtggttccaatagcgaaactgaattaagcatt
ccgtgcggaaacttctctcgtcaatatgcttgtatgtgtgattactacggattaccgtat
cgagaagaagtggcttgggacgtggatacgatctacatgtcacacaactcgaaagagttg
aatcttcgagattttgaccatttagatcccaaggatttaattcctatcatcgccgccttg
gagctcaattccttttttctgcagttccgttgcagtcacttgaagctgtcacacgagtgc
tcggaacgactcttggccgtgcttaagaaatcgaccactctcgaagagatctatgttgac
aatgctggcttcaaaggggattttgccaacaagcttagcatggctatcatatcgaattca
aacagctcacttcacgggatcgacttgtcgcacaatctcatcgaagatcgtggcattact
agcctatgcggtttcctggccaaagctagacaaggcgccacacatctcagttcgtcactg
tcgaaagctcaccgtggtctagtgaagctctcgctttcccactgcgggctaacggggaaa
ggcgtggctcaaatagggcatgctcttgtcctcaacaaatgcatggcttcgtccttgcaa
catctagatttgagcaataatgtggccaaagatgacatcaatacgatttgtagctttctt
gcccaaccgaatgtgctgacatttctaaatttatcaagcactgacatcgcactagaaccg
atatttggtgctctattacgaggaggaaccacttatcttcgtcatttagatttatcgaaa
aactatttctctacaaagaagggcaaagaactgccaccatccttcaagcagtacttcact
tccgctctggctttacggaccattatcctttctcattgtaaaattacgccagaagcatta
aagaatcttctccttggtctggcgtgcaacgagtccatcgataatgtcacgttagatctg
agcaataacatattaggcaatggtggatgccacgttcttgagtcatgcattcatggtgtt
cggtgtgtctcgactttggacataagcgacaacgggattgatgtggagatggctggagtc
ttactctcaatcagtcggaataagtccatgaagaagctgatcctcaataaaaacttccaa
aacatgaaatcaaaacatgctaccaccgtcatcgatgccttcgtgcatctcttgcaggaa
gaggactgcgttattgaggcattaagtttggtggattgcaagttgaagagtgaactgtat
agtttaatcaacgcagttggaagtaatcaatcgttgcagcatcttgaccttaacggtaat
tacatgggtgatccaggcgctcgtctcctctccaaagccttacagatcaatacgtcccta
aaagcgctatcgattgaccgcaatagcatcaccgtccatggttacagtgatatcgcctac
gcactagaaagtaaccggactctgaggtgtctatcctacccgctgcacgacataatggta
gccgctaagacgggcactgacaaagtcgacattctttggaagcaaatacaggaagcatta
cagcgcaacatgtcgcttattggtccctcgcccaacgggacttcggcttccgtccgttcg
catcaaaagggtgaaacaacgcataatacttctcagaatcagctgttggatcggcttatc
attcaagtgaatgaggccattcgtaccctccagaggcagggcagtgagggtagggcgggt
gatatcgaaatcgcgcgaaatctgctagtcgacgcccactccgcaaaagagcttctcgga
aaacttgtgtccagcgttgaagtggctcaggataacatatctttgagttcggcgacgaag
ccaatggtcgaagagctacaggcattgcttacctctcacttacaaagcatcggcgataat
ttgtggcattgcgctcttcagcactgtaacactgtcatgagcaattcgtgcgtctctgat
cagctaagaaaatcgatcgagagccaatccttttttcccgtcagcgtaatccggaaagcc
gtgatggagaacgccactttacagttgacggagaagtttgacgagttatcgacagcactc
tgccgtacagtctctgaaaacgtcatggatgaagttgttcaatctttgacgaacatcttt
aaaaccctggcgggagattccaacgtcaccctagattgtaaaaaacgttcgtccacgcca
gatgtactcaaatcccgaacacgaatcaactcagaaatgaacacccaacgtggcgaagat
gaatctgaagacacgatcgatcaacaatcggatcgctctccagtgttggaatacctcaat
ctcgcaacaccagtggcaagcaaacgaaggaatctgttgagtcgaaaattgcgaccaaag
tcgacggttggcatgggtcaaggtgcttctgctgatgacattcctgatctcgttcccccg
ttgaatgagcaactctctggcattcatcaccagggtgaagatcccgacgcaaatgaagaa
gagcccggtgtcaatgtcgacgaatctcaggccgatgtctccagaaagtcggctccctta
aaacatttgggtttaagccgccccaaaaaacctaaaactcggttgcctactcgaagcgcc
gccactttgcgcgtcggcaattcagagaccgcgtcgcaagaaagcttggacgtagaagga
gatcttagccaagggctggacacgttttttcacacgactacaatggcaaccacaacaggc
ggtagcagcgtaagtttaggtagtagccggatgcgaggtagtttgggcagtgtcagtagc
gccgaattgggttcgccctcattagaaagcatgtcggccgaaagcagcccgatgcaccgt
tctgtggctggtgacaaattaggcgaggaggttggcagcagtagcagggaggagctcact
ctcgatgaagacgctgtcaaatcaaaggagaaacgtaagagcgaggatgatttgtcctcg
gtaactaaggagaagcgaaaagattctggccgtggaatgggagttagattgttgtcttcc
atattcgggaaaaatccgagtccctctccgacgggcgatggttcgccgtcgccagcacca
agcaaatctcctgtggcgaaaaccaaactcgcatcggtgacaaaggagccagaatctgaa
tcaaagccagttgaagatgaagctgaacctgctgtgcccaaacgatctgctgttccatcc
aaattgggtatcggtgtcggaggcaatgtccttgccgagatgaaagccagacaggagcgc
cgaatatctggcatactgcacaagcagaattccgaagagtctgatttctccgagcgaggc
atggaaaaaccggagcctaataaagccaataatttgtcaccgaatcctctcgggggaatc
agactgcgaccaactcctcacacgccagaagaacaggagccaccgaaattgcccgaaaga
aataatgttcgatttattcgaccaatagggctagaggaagtggaatcagaccgaaacaaa
ccagccaacccactaaccggcttccggctccgccatagaggtggtgccgatgaacccgaa
acggccaaattagaggataaatcgaatgcgttaaatcagataagattgagggctaccagt
acggtggtggacgattcaccgtcacccgatccatcgggcgacgcaaaagctaatccgcta
agtggagtacgattacgttctactggaatcaacgtgacagatccgctcaaatcgcccaat
aatggcgattctaacgcagaaaacaagagtgattctaggaactctctgactaaattaaag
cctcctcccctagcccccaagcctagaccttggtcaatcgtcggctctgacaagaaaacc
gacgacattgatgcagccgatgctgcaaaagaaaatgacgcaaaagaggctgtgaagccg
agcaaagttcgagccatggcagcagccgtcaattttaacaattcaggctctgatgttgtc
cgccgtagcaacaaacattcgcatgaggaacaggacggacttccagttgaattcttggag
tccaaagacggtgaagtggaacaagcatatggacaagattctctgagttccattgcgttc
ctcactaaccaacaggctacgcttcccnaacaacaacaacagcctttgatttcccagcaa
tccccagcgtctttgattttaaacaacttttcactagaagacgccgtcgacgtgtaa
DBGET
integrated database retrieval system
