Daphnia magna (water flea): 116918963
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Entry
116918963 CDS
T07514
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmk03000
]
116918963
Transcription factors [BR:
dmk03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116918963
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
116918963
NCBI-ProteinID:
XP_032780675
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All DBs
Position
LG3:3005176..3007730
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AA seq
474 aa
AA seq
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MAAMCVESSSSTSSSPVDGHVRDANNINNDHIKRPMNAFMVWSRGQRRKMAQDNPKMHNS
EISKRLGAEWKMLTEIEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKSGMSSGSKTKES
SRYPYSVDTASHRHHQMSHHLPTHSHHHIQPNNSTMLPSFNRNLFSPPDPVGGTIPAAHP
SASSSSASSSGSTSAVANDRTANERAEFNYSRMLFASQLPGLHLGFATLGHPALHAATTV
QIPWYHYSMDSNVFNPLTHPASAGLQHHSVNHHQQQQYLANFDSQLVAHHKMMRSIHESV
SSKKSPVPDDRVSPVSNNNSSRPISAASSYDSECPIVTARSGTQGVSSTPISLSNAPSST
GGMQLLPPPPPPPSMAATMAAAAAAGLFPFHYGAAAAAAAAAAAASYPHHPTNNSPSGGS
STSAHLGCSCSPLCVSMNHHHHQQMHAEQRGAMINANSPIPTSRQHRCSLSSIL
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaatgtgtgtggaatcgtcatcgtcgacttcgtcatcgcccgtggacggacac
gtgagggacgccaacaacatcaacaacgatcacatcaaaaggcctatgaacgcattcatg
gtctggtcgagaggacaacgacgtaaaatggcccaagacaatccgaaaatgcacaattca
gagatatccaaacggctgggtgccgagtggaaaatgttgacggaaatcgagaaaagaccc
ttcatcgacgaagccaaaagactcagagcgttgcacatgaaggagcatccggactacaag
taccggccgcgtcgcaaacccaaaagcggaatgtcaagtggcagcaagaccaaagaatcg
agccgttatccgtactcggtagacacggcatcgcaccgtcatcaccaaatgtcgcaccat
ctgccaacgcattctcaccaccacattcaaccaaacaattcgacaatgttgcccagtttt
aaccgtaaccttttctcgccacctgacccggtcggtggaacgattccagcagcgcacccg
agtgcttcgtcgtcgtcagcttcatcgtcgggctcgacatcagcagtcgcaaacgaccga
acagccaatgaaagggccgaattcaactactctcgaatgctgttcgcttcgcagttgccc
ggtcttcatttgggtttcgccaccctgggtcatccggcacttcacgctgctaccaccgtc
cagataccgtggtaccactacagcatggattccaatgtgtttaacccgctgacccatcca
gcttcggccggccttcaacaccattcagtcaaccatcaccagcaacaacaatatctggcc
aatttcgattcgcagttggtcgcccaccacaaaatgatgcgctccattcacgaatccgtt
tcatccaagaaatctccagtgccagacgacagggtatcgccagtgtccaacaacaacagc
agtcgacccatatcggccgcttccagttacgattcggaatgccccatcgtaacggcccgt
agcggcacgcaaggagtgtcctccacaccgatcagtctatctaacgctccatcatcgaca
ggaggtatgcaactcctgccaccacctcctcctccaccatccatggctgccacgatggca
gcggcagccgcggccggtctttttccttttcattacggagcggctgcggcagccgctgca
gccgccgccgccgcgtcttatcctcaccatccgaccaacaacagcccaagtggcggtagc
agcacatcggctcatttgggctgcagttgtagcccactgtgtgttagcatgaatcaccat
catcatcaacagatgcacgccgaacaacgaggcgcaatgatcaacgcaaattcgcccata
ccaacatctcgccaacatcggtgttctttatccagcatcttgtaa
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