Daphnia magna (water flea): 116919073
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Entry
116919073 CDS
T07514
Name
(RefSeq) DNA excision repair protein ERCC-8
KO
K10570
DNA excision repair protein ERCC-8
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03420
Nucleotide excision repair
dmk04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116919073
09124 Replication and repair
03420 Nucleotide excision repair
116919073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmk04121
]
116919073
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116919073
Ubiquitin system [BR:
dmk04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116919073
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
116919073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WDR55
Beta-prop_EML
Beta-prop_WDR75_1st
EIF3I
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_1st
NBCH_WD40
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_Nup120_160
eIF2A
Motif
Other DBs
NCBI-GeneID:
116919073
NCBI-ProteinID:
XP_032780833
LinkDB
All DBs
Position
LG3:805159..806843
Genome browser
AA seq
403 aa
AA seq
DB search
MNDVDAICNLKTGLIDARKFRSNQATKRVSRLCLSNFQEVENSHSAGINTIDLDKVEGRY
LLSGSADGSIHIHDVLNQSGNLQFTCKNVGKIDRQSNRYCHKYSVECVQWYPLDTGMFLS
SGMDKHLKIWDANAQIPADVVIINGKIYHHHMSPNATQHNLVAVASTANQVFLADLRSGS
TTHELRSHSSSVLSVKWSPMQEFQLASGSMDNRLLMWDVRASRSCLFSMDQDNGRNHANV
EKTTAHNGYVHSLSFTSDGLFLISVGTDSRMRLWNSETGRNEMINYGKILMESKKGTRFD
ISSDTEPQMVFVPSQGNILVYELTTGIKRAALLGHYNTVTCCAYNENLHTLYSGSNDRNI
LVWAPEAAETIREDPVNKDVEFGSRSLMPRRTLTEDAWSSDEG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgtggacgctatttgtaacttgaaaaccgggttgatcgatgccaggaaattt
cgttcgaaccaggcaaccaagagagtctctagattgtgtctcagtaacttccaagaagtt
gaaaactcccattctgcagggatcaacaccatagatctggacaaagtagaaggaagatat
ttactctccggtagtgctgatggaagcattcacattcatgatgttttgaatcagagcgga
aatttgcagtttacttgtaaaaatgtggggaagattgacaggcaaagtaatcgttactgc
cataagtacagcgtggagtgtgttcagtggtaccccttggatacaggaatgttcctgtct
agtggcatggataaacatttgaaaatttgggatgccaatgcacaaatcccagctgatgtt
gtcatcatcaatggtaaaatataccatcatcatatgtctcccaatgcaactcaacacaac
ttggtggcggtggcaagcacagcaaaccaagtgtttttggctgatctacggagtgggtca
accacccacgagttgagaagccatagttcgtcagtattaagcgttaagtggtcaccgatg
caagagttccagcttgcctctggttcgatggacaatcgacttttaatgtgggacgtgaga
gcctccaggagttgtctgttttccatggatcaggacaatggaagaaatcatgctaatgtt
gagaagaccacagcacacaacggctatgtgcatagtttgtccttcaccagcgatggcctt
ttcctaatttctgttgggacagatagccgaatgcgtttatggaacagtgaaacaggacgt
aacgagatgatcaattatggcaagatccttatggaaagtaagaaaggaacgcggttcgac
atctcatcagacacggagccacaaatggttttcgtgccttctcaggggaatattctggtc
tacgagttaactacaggtatcaaacgagctgcgttactaggccattacaatacagtcacc
tgttgcgcttacaatgaaaacctgcatacactctatagcggtagcaacgatcgcaacatt
ttggtttgggcaccagaggcagcagaaacaatacgggaagatcctgttaataaggatgtt
gaattcggatctaggagtttaatgccaagaagaactcttacggaagacgcctggagtagt
gatgaaggatga
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