Daphnia magna (water flea): 116919225
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Entry
116919225 CDS
T07514
Name
(RefSeq) UV excision repair protein RAD23 homolog B
KO
K10839
UV excision repair protein RAD23
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03420
Nucleotide excision repair
dmk04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116919225
09124 Replication and repair
03420 Nucleotide excision repair
116919225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
dmk03051
]
116919225
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116919225
Proteasome [BR:
dmk03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
116919225
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
116919225
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Crinkler
CUE
DUF1421
Rad60-SLD_2
Dsc3_N
OTU1_UBXL
Ubiquitin_4
Ubiquitin_5
DUF2399
UBA_9
UBA_RAD5A
UN_NPL4
Motif
Other DBs
NCBI-GeneID:
116919225
NCBI-ProteinID:
XP_032781061
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Position
LG3:complement(506972..508911)
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AA seq
384 aa
AA seq
DB search
MLVTFKTLQNTTFQIEIDPSSTVKTLKEKIENEKGVDYPAVGQKLIYAGKILDDHSVLAE
HGINEKKFIVIMVTKPKASEPATITPPEATSQSLATTPAPVAAPTPAPAPIVSPPVTTTG
DASVSTGLLAAESALIVGDDYNQMVQNIMDMGYPRDQVERALRASFNNPDRAVEYLLTGI
PDRAEAGEGAPGDGQGQDEAALEFILGGRGQSEAALSMEGEGEEGEELAPGEDPLAFLRS
QPQFAQMRQVVQQNPSLLNAILQQIGQTNPALLQMISQNQAAFFRMLTEPASGAAGSASV
APASGAQSGTGSGRTAESPRQGQEEGAGDYFAPGVIHVTPQDKEAIERLKALGFPEHLVV
QAYFACEKNENLAANFLLSQNFDD
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgttggtgacgttcaaaactcttcaaaacactacatttcaaattgaaattgatccttct
agcacggtcaaaacgctaaaggaaaaaattgagaatgaaaaaggggttgactatccagct
gtcggtcagaagctcatctatgcaggaaaaatattagatgaccatagtgttttagctgaa
catggcataaatgaaaaaaagttcatcgtcattatggttacaaagccaaaggctagtgaa
cctgcaaccatcaccccacctgaagccacatctcagtcactggccaccacacctgcccct
gttgcagcaccaaccccagctccagcgccaattgtttcaccaccagtcaccactaccgga
gatgcttcagtttcaacagggttactggctgctgaatcagctttgattgttggtgatgac
tacaaccaaatggttcagaatattatggatatgggataccctcgtgaccaggtggaacga
gctctgagggcaagttttaacaacccagacagagcagtagagtatctccttactggaatt
cctgatagagcagaagctggcgaaggtgcccctggtgatggacaaggccaggatgaagca
gcacttgaattcattcttggcggaagaggacaatctgaagctgctttgtctatggaagga
gagggtgaagaaggtgaggagcttgctcctggtgaagacccccttgctttcttgcgcagt
caaccacagtttgcgcaaatgcgacaagtcgttcaacaaaatccatcactcctcaatgct
attctgcaacagattggccaaacaaatcctgcgcttcttcaaatgatttcacaaaaccaa
gcagccttctttcgaatgttaactgagccggcctcaggtgcagctggttcagctagcgtt
gctcctgctagtggtgctcaatcagggacgggaagtggaaggacggcagaatctcctcgt
caaggccaagaagaaggtgccggagactactttgctcctggtgtcattcacgttacacct
caagataaggaagcaattgaaaggttgaaagcactgggtttccctgaacatttggtagtt
caggcgtatttcgcgtgtgaaaagaacgagaacttggctgctaactttctgctatcccaa
aatttcgacgattga
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