Daphnia magna (water flea): 116919437
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Entry
116919437 CDS
T07514
Name
(RefSeq) uncharacterized protein LOC116919437 isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116919437
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116919437
5.6.2.5 RNA 5'-3' helicase
116919437
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116919437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
FHA
AAA_19
Viral_helicase1
UvrD-helicase
Yop-YscD_cpl
ResIII
AAA_30
UvrD_C_2
nSTAND_NTPase5
NAT10_TcmA_helicase
Adeno_IVa2
AAA_16
SLFN-g3_helicase
AAA_22
CC2D1A-B_DM14
KIF21A_4th
Motif
Other DBs
NCBI-GeneID:
116919437
NCBI-ProteinID:
XP_032781319
LinkDB
All DBs
Position
LG3:complement(2195393..2203104)
Genome browser
AA seq
1770 aa
AA seq
DB search
MDDWYLQRHGYPDCRYHLNILLGTREKLTIGRKAGGAVDIVCNGKTVSREHCVLKYVDNC
WTIEDLKSLNGVYLNKSRIPANTPTSMHEGCVLGVGAVDSSELDYYIFDLLKNTVKSESE
DDDAVKIFELPIPAATTDTTPCDPLEETSSKAGPLSEGNSNLLENPVDRQNNNVVVPSAS
GVVESVQRGSSNFLLEEPPRKQPVIPEKPTPEEVLPAKNLPVVTEKHSTHLDSPTQGGPE
KEFLVRNQYEDKETSSALTNSRRPYLDDVKLKLDCKVVIEGLPKHFTVSGTNVTCNKTRT
KKRVKGKRRLLCISDTESEGEEILENGNHHPKNPPVKAESKGKQLKNVINLEEPTSSLDD
YSDEDGVILSPIPSTSNASSNHLVTKSKFVVEKLSSAMEAEQKMFSDDSDTKRRMLPAPS
MRVENFEEFVGECEILKVDTANLQRAHHYPDSDDDVIILSSGDEETFSSQTRFKQEPIDV
PDSSSVNHDAEKPLSIDENDTSSSSDEEDNRFFPELSQAFLNEIAQEESDEEQTNLSRKI
SGRGTDVDKLNTLVKSGRFIPKGKMTLPTEPLTLNNPPRGRFTLATAGTSARRESENQSE
AEETEDQRKKPAVSNVVTPRTAKIIPIRPQVSRKRKQISSIASVREKMCKDQGMESYVRC
VHDATKKTDDRPSTSSLPIQVSRKKISPPKPRIEVSKAPKSSTPNPVKAKVTKKSRGDMF
LKDLVGEEQISKEGAKKGPTSALSGFCIPKLSKSTVESSSNGQEASSSSGASAQKRKHPD
HDEDRLNQAEANAVDESTSVSYAFKKPQKRVARRTNSCDDDDRNGGSLSSKFPNRRHDRP
RDEALPLGRNKKWGPPNGIKNVPREDVASRHAGNREPTPHSGAQDNQQSNHEEVGSSAQH
DETIQLPMPVDDVTDCEKRIRSLSLSASENGNHGILRYHGWNNVSKRRKKVSIVEENNKI
YEIEARAPTPPLPSRTPFLPIDHTALTHDILYRICCWNYNWIAQQKLQQQQKNDEPPPLL
AAANRENSQSLPALSLLPVVSAYDSLEAYCTIFQSLMFHETWAILCKDMESSPSTPIRVL
VCSKPKSCNGFAILQCEALAATRINDKDLVAITVPIAPQKPPAKYFCVVDQLVIRNWRKE
DTDPRLLESCKRPSDTYMRMSFVLLVKFSNVPKELDKIYTITKITRLSTVLKQFILNADL
SRSPLCDVILHPSDFSDAFKLDTVDIEGKNDLLNPVQYKAVESITKTIVCASDREPKVAL
LQGPPGTGKSHVIVELISRMLYIHYEKTNKYPRILVCAPSNNAVDEIAARLMRVRDARKS
NYHIVRVGVTTSMHPSVAKISLEELIKKHQQRIMETKESPESCKLRTLTEERRLLRKNKT
CLIASIDAANKNGQSDEARMYARKLEQLEGQIEGVDRSLHECRKNHFNYFNTERMRSAFK
KDVISGSQVIFSTLNSCRSRDMENLFVQNRRGTAFLCCIIDEASQCTEPESLTPLAFGIS
KLVLIGDPDQLPATVTSQYAARNRFDQSLFNRFYSSRSSTNSEDEEGVLMLDTQYRMAPS
ICEWPSKYFYGGKLVTAENLPRTGPCYEYRALNVIDGQEILEDQSYKNEREALLLAKVVL
LILNSPSARGKSVGVITFYRSQQQCILKKIQEEASHLQCAREIERVEVNTVDSFQGREKD
IVIVSCVRAREPRNLAGDIGFVSSLQRLNVALTRAKESLVVCGHFQTLQMNETWRDLINN
AQGREVAHVVTSDYTSANLSPLVMRPEHKV
NT seq
5313 nt
NT seq
+upstream
nt +downstream
nt
atggacgattggtatcttcaacgccatggttatccagattgcagatatcatttaaatata
ctcttaggcacacgagagaaattgacaatcggacgtaaggcgggaggggctgtagacatt
gtgtgtaatggcaagacagtgtctcgagaacattgtgttttaaaatatgtggacaactgt
tggacaattgaagacttgaagagtttgaatggagtttacttgaataaaagtagaattcca
gcaaatacacctacttccatgcacgaaggatgtgttttaggagttggagcagttgattca
tcagagttagactactatatttttgacctcttgaaaaatactgtaaaaagtgaaagtgag
gatgatgatgctgttaaaatttttgaattacctattcctgctgccaccactgatactact
ccatgtgatccactggaagaaacatcgtctaaagctggccctctctctgaaggaaactca
aatcttcttgaaaacccagttgataggcaaaataataatgttgtagtaccaagtgcatct
ggggtggtggaatctgtccagaggggttcttcaaactttttattggaggaaccacctaga
aaacaaccggttattccagaaaagccaaccccggaagaagtattgcctgccaaaaatcta
cccgttgtaactgaaaaacattctacccatttagattcaccaacacaaggaggccctgag
aaagaatttctagtacgcaaccaatacgaagacaaggagacctcttctgcgttaacaaat
tcaaggcgcccttatttggacgatgtgaaactaaagttggattgtaaagtagttatcgaa
ggattgccaaaacatttcacagtttctggaaccaatgtcacttgcaacaaaacacgcacg
aaaaagcgtgtgaaaggcaaaaggcgtctgttatgtatttcggacactgaatcagaaggt
gaagagatacttgagaacggcaatcatcacccgaaaaatccccctgtgaaagctgagtca
aaaggaaaacagttgaaaaatgttatcaacctggaggagcctacttcgagcctcgatgac
tacagtgacgaggatggggtcatactatcaccaataccttctacatctaatgcatcttca
aatcacttagttaccaaatcaaaatttgtcgtagaaaagctttctagcgctatggaagcg
gagcagaagatgttttctgatgacagtgacactaaacgtaggatgttgcctgctccatcg
atgcgagttgaaaattttgaagagttcgtgggagaatgtgaaattttgaaggtggacact
gctaatttacaacgtgcccatcattatccagattccgatgatgacgtaattattttaagt
tccggtgacgaagaaacgttttcttcccaaacacgcttcaaacaagagcctattgatgtt
ccagattcttcttctgttaatcatgatgccgaaaaaccgttgtcgatagatgaaaatgac
acgtcaagttcgtcagatgaagaagacaatcgattctttcctgagctttctcaagcgttc
ttaaatgaaatcgcacaggaagaatccgacgaggaacagacaaatttgtccagaaaaatt
agtggaagaggaactgatgtggacaaactgaatactttagtcaaatctgggcgctttatc
ccaaaaggcaaaatgaccctcccaacagaacctcttactttgaataatcctcctagagga
cgctttacccttgcaactgcaggcacgtctgcaagaagagaatcagaaaaccaatcggag
gcagaagaaactgaagatcaacggaagaaaccagccgtatcaaatgttgtaacaccgcgt
acagccaagataataccaatcagaccgcaggtctcccgcaagaggaaacaaataagtagt
attgcttcagttcgagagaaaatgtgtaaagatcagggtatggagagttatgtgcgttgt
gtacatgacgcaacaaagaagacggatgataggccatcaactagtagtctaccaattcaa
gtatcgcggaagaaaatctcgccacctaaaccacgtattgaagtatcaaaagcgccaaaa
tcatctacaccaaacccagtaaaggctaaagttacgaaaaaatcccggggagacatgttt
ttaaaggaccttgtcggtgaagagcaaatctctaaagaaggtgcgaagaagggtcccact
tctgcattatcaggcttttgcataccaaaactatcgaaatcaacggttgaatcgtcttct
aatggtcaagaagcatcatcttcctcaggtgcatcggcacagaaaaggaagcatcctgat
catgatgaagatagattgaatcaagccgaagcaaatgctgtcgatgagtctacatccgtc
tcatatgcattcaagaagcctcaaaaacgagtagcccgacgaactaatagttgtgatgat
gacgatagaaatggtggatcgttatcctctaagtttccaaacagacggcatgacagacct
agagatgaagccctgccccttggaaggaacaaaaagtggggtcctcctaatgggattaaa
aacgtgccccgagaagatgtggcatcaagacatgctggtaatcgagaacctacaccacat
tcaggagcgcaagataatcaacagagtaaccacgaagaagttggatcgtcagctcaacac
gatgaaactattcaacttcctatgccggttgatgatgttacagattgcgaaaaaagaata
cgatctctaagtctgtctgcatcggaaaatggtaatcatggtattttaagatatcatggc
tggaataacgtgtcaaaaaggaggaaaaaggtatcgattgtagaagaaaacaataaaatt
tacgaaattgaggcacgagcaccaactccaccgcttccatcaagaacaccttttcttcct
attgatcatacggcgctaacacacgatatactgtacagaatttgttgctggaactataat
tggattgcgcaacaaaagctccaacaacaacagaagaatgatgaaccacctccgttgctg
gcggcagcaaatagggaaaatagccaatctctacctgcattgtctttacttccagtagtg
tcagcctatgacagtctcgaggcttactgcaccatcttccaatcactcatgttccatgag
acatgggccattctttgcaaagacatggaaagcagtccatcaactcccatcagagtatta
gtttgttccaaacctaaatcatgcaatggttttgcgattttacaatgtgaagctttagcg
gcaacgaggataaatgataaagatctcgtagccataaccgttcctatcgcaccacaaaag
cccccagcaaaatatttttgtgttgttgaccagctagtgatcaggaactggcggaaagaa
gacactgatccacgcttgctggaatcatgcaaacggccgagtgacacttacatgagaatg
tcttttgttcttttggtgaaattttcaaacgttcccaaggaactagacaaaatctacact
atcacaaaaataacgcgcttaagcaccgtgctgaaacagttcattctaaatgctgatttg
tctcggtcaccgctgtgcgacgttattcttcatccaagtgatttctcagacgctttcaag
ttggatacagttgatattgaaggaaagaacgacttgttaaatccagttcagtataaagct
gtggaatcaattacaaaaacaatagtttgcgcatcagaccgcgaacccaaagttgctctt
ttacagggtccaccaggtaccggtaaatcgcacgtcatcgtcgaattgatttcccggatg
ttatatatacactacgagaagactaataagtatccacgcatattggtttgtgccccgtca
aacaacgcagttgatgaaatagctgcccgcctcatgcgtgttcgtgatgcaagaaaaagc
aattatcatattgtacgagtcggtgttacaacgtcaatgcacccaagcgttgcaaaaatc
tcgttggaagaattaataaagaaacaccaacaaagaattatggaaacaaaggaatccccg
gaaagctgcaaacttcgtacgttgacagaagaacgccgtcttctacggaaaaataagaca
tgcttaattgcttcgatcgatgccgctaacaaaaacggtcaatctgatgaagcgcgaatg
tatgcaagaaagctagagcaattagaaggtcaaatcgaaggagttgaccggtctttacac
gaatgcaggaagaatcacttcaactatttcaatactgaaagaatgcgttctgctttcaaa
aaagatgttatttcggggtctcaagtaattttttcaacgttaaactcctgtcgcagcaga
gatatggaaaacttgttcgtccagaatcgaagggggacagcattcctttgttgtataata
gacgaagcgtctcagtgcacagaacccgaatcacttacaccacttgcatttggcatcagc
aagttggttttaattggggatccagaccaactaccagctactgtcacatctcagtacgct
gcacgaaatcggtttgatcagtctcttttcaaccgtttttattcgtcgcgatcatcaact
aattcggaggacgaagagggtgttcttatgttggatacgcaatatcggatggcaccatcc
atctgcgagtggccttcaaagtatttttacggcggaaaactagtaacagctgaaaacctt
ccgagaacgggaccttgttatgaatacagggcgttgaacgttattgatgggcaagaaatt
ctcgaagatcaaagttataagaacgagagagaggcactgctgttggctaaagttgtacta
ctgatattgaattccccctctgcgcgaggaaaatctgttggtgtcatcacgttttatagg
agtcagcagcaatgcattctgaaaaaaatccaagaagaggccagccatttacagtgcgct
agagaaatcgaaagggtggaggtgaacaccgtcgatagtttccaaggtcgagagaaagat
attgtgatagtgtcatgcgttagggcgagggaaccaagaaatctcgctggagatataggt
ttcgtcagctcgttacagcgactaaacgttgctttgactcgtgctaaagagtcacttgta
gtttgcggccatttccaaacactacaaatgaatgaaacttggagagaccttattaacaat
gctcagggtcgcgaagtagcccatgtcgtcacaagtgattatacttctgctaaccttagc
ccattagtcatgcgccctgaacacaaggtgtaa
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integrated database retrieval system
