Daphnia magna (water flea): 116919802
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Entry
116919802 CDS
T07514
Name
(RefSeq) general transcription factor IIF subunit 1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116919802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116919802
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
116919802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
DUF3874
Motif
Other DBs
NCBI-GeneID:
116919802
NCBI-ProteinID:
XP_032781728
LinkDB
All DBs
Position
LG3:complement(4206461..4209024)
Genome browser
AA seq
546 aa
AA seq
DB search
MAANNGTPAAGGSAPVPAPTVQNIDIRVPKNQNKKLAIMRFNGSMGIDFTKWTHTKMERE
NNQVQFKGFNEDMPKFGAGSEYGREAREEARRKKYGIISKKYNPENQPWILQHGGKTGKK
FRGVRDGGINENASYYVFTQAPDGVFEAFPVQEQYSFQAVQNYKPLSIEEAEEGYNMRNK
TYNMFNVMMRKRLRKADEDAEEEGEEEGEGKGKSKKKKGVKDSRFGDELDDMMASSDDDS
SDGDDDDDDGENKKKKKKGKKPVKPKKKRKNASDDEALEDSDDGDGEGRELDYISSSDAD
ESDVEKEEAKDGLKGVAEEDALRKLLNSDEEDEDEEKEEEEDKDKEEEDAEGAEDQPGDK
PSKDEKGDKKKKKEKKKNKDKKPRNEDYGSSSDSGADTSGSELEKAKPSPKMKSGSANSS
RSATPTKPLIPQPETTLSDSKRKGMSEAVLGQAAKKPRLEMASAALAASAASAASSSSAN
EGVNEESVRRYLSRKPMTTTELLQKFKSKRTGLTSEQLVPHIAQILKKINPVKQTIKGKM
YLSIKG
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaataatggaactcctgctgctggtggatcagctcctgttcctgctcccact
gtacagaatattgatattagagtacccaagaaccaaaataagaaacttgccattatgcga
ttcaatggctcaatgggtattgattttacaaaatggacacatacaaaaatggaaagggaa
aacaaccaagtccagtttaaaggatttaatgaagatatgcccaaatttggtgctggcagt
gaatatggtagggaggcacgtgaagaagccagacggaaaaagtatggcatcattagtaag
aaatacaatcctgaaaatcaaccttggattttgcaacatggagggaaaactggaaagaag
ttcagaggtgtaagagatggcggtattaatgagaatgcctcatactatgtttttacacaa
gcgccagacggtgtatttgaggcatttccagttcaggagcaatacagctttcaagcagtt
caaaattataaacctcttagcattgaggaagcagaggagggatacaacatgagaaacaaa
acatacaatatgttcaatgttatgatgagaaaacgacttcggaaagcggatgaagatgcc
gaagaagagggagaagaagaaggtgaaggcaaaggaaagagcaagaaaaagaagggagtt
aaagattctcgctttggggacgaactagacgacatgatggcctcgtctgatgacgattct
agcgatggtgatgatgacgacgatgacggcgagaataagaaaaagaaaaagaaaggcaaa
aaaccagttaagccgaaaaagaagcgaaagaatgcgtccgatgacgaggctcttgaagat
agtgacgatggcgatggcgaaggcagagaattagattacatttcgtcctccgacgccgat
gaaagtgatgtcgaaaaagaagaagcaaaggatggactcaaaggtgttgccgaagaagat
gcgctgcgcaaattactcaattcggacgaagaagatgaggacgaagaaaaggaagaagaa
gaagacaaagataaagaagaagaagatgctgaaggcgccgaagatcagccaggtgataaa
ccttccaaagacgaaaaaggtgataagaagaagaaaaaagagaaaaagaagaataaagat
aaaaagccccgtaatgaagactatggatcgtcaagtgacagcggtgcagatacctcagga
tccgaattagagaaggctaaacctagcccaaaaatgaaatcggggagtgcaaacagttcc
cgatcagccactcctacgaaaccactaatcccacagcctgaaacaactctatccgacagt
aaacggaaaggaatgtcagaggctgttttaggacaagcagcaaaaaaaccacgattggaa
atggcatccgcggccttggcggcttccgccgcttcagctgcatcatcttccagtgctaac
gaaggagtaaatgaagagtcggtgaggcgctacttatcgcgcaaacccatgacaacaacc
gagttgctccaaaagttcaagagcaagagaactggtttgacttcagaacagcttgttccg
cacattgcccaaattttgaaaaaaatcaaccccgtaaagcaaaccattaaaggaaaaatg
tatttgtcaattaagggctaa
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