Daphnia magna (water flea): 116919853
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Entry
116919853 CDS
T07514
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
dmk03015
mRNA surveillance pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116919853
09122 Translation
03013 Nucleocytoplasmic transport
116919853
03015 mRNA surveillance pathway
116919853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116919853
03041 Spliceosome [BR:
dmk03041
]
116919853
03009 Ribosome biogenesis [BR:
dmk03009
]
116919853
03012 Translation factors [BR:
dmk03012
]
116919853
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116919853
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116919853
mRNA cycle factors
Stress granule specific factors
116919853
Spliceosome [BR:
dmk03041
]
Complex C
Other components
EJC/TREX
116919853
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
90S particles
Helicases
116919853
Translation factors [BR:
dmk03012
]
Eukaryotic type
Initiation factors
eIF-4
116919853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
UvrD-helicase
TniB
Utp25_C
Motif
Other DBs
NCBI-GeneID:
116919853
NCBI-ProteinID:
XP_032781803
LinkDB
All DBs
Position
LG3:complement(725751..727851)
Genome browser
AA seq
404 aa
AA seq
DB search
MESKGRRVVQQLPDDLTNIEFETSEDVNVIPTFDSMGLREDLLRGIYAYGFEKPSAIQQR
AIAPVIKGRDVIAQAQSGTGKTATFSISILQSLDIQTRETQILVLSPTRELAVQIQKVIL
ALGDYMNVQCHACIGGTNVGEDVRKLDYGQHIVSGTPGRVFDMIRRRTLRTRSIKMLVLD
EADEMLNKGFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTSKFMTDPIRILVKRDELT
LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM
HGDMPQKERDTIMKEFRNGQSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVKNDDIRILRDIEQYYATQVDEMPMNVADLI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggagtctaaaggccgacgtgtcgtccaacagttgccggacgatttaaccaatatcgaa
tttgaaaccagtgaagatgttaatgttattcccacatttgacagcatgggcctccgtgaa
gacctgctaagaggaatttacgcttatggatttgaaaaaccatctgccattcaacaaaga
gcaattgcccccgtcatcaagggtagagatgtcattgcccaggcacagtctggtacaggc
aaaacagctacattttcaatttcaattcttcagagtcttgatattcaaacaagagagact
caaatattggttttaagtcctacaagagagttggctgttcaaattcaaaaagtcatttta
gctcttggtgactatatgaatgttcagtgccatgcatgtattggtggcactaatgttgga
gaagatgtacgaaaattggactatggtcagcacattgtttctggaaccccaggacgtgta
tttgatatgatccgccgacgtactctaaggacgcgctcgattaagatgttggttttagat
gaagctgatgaaatgttgaacaagggatttaaggaacaaatttacgatgtctatcgttat
ctgcctccagcaactcaagtggtccttctttcagccacattgcctcatgaaatcctagaa
atgaccagtaaatttatgacagatcccattcgcattttagtcaaacgtgatgagttgact
cttgaaggaataaaacaattctttgttgctgtcgaacgagaagaatggaagttcgacacg
ctatgcgatctatacgacactctcactatcacgcaagcggttatcttttgcaacaccaag
cgcaaggttgactggttgacggagaaaatgcgtgaggcaaattttacggtgtcttccatg
cacggggacatgcctcaaaaagaacgtgataccatcatgaaagagtttcgcaatggccaa
agccgagttctaattacaacagatgtttgggctcgtggaattgacgttcaacaagtttca
ttggttatcaattatgatctccctaacaaccgcgagttgtatattcatcgcattggccgt
tcgggtcggtttggacgcaaaggtgtagcaattaatttcgtcaaaaatgacgatattcgt
attcttcgcgatatcgaacagtactatgccacacaagttgacgaaatgccaatgaacgtg
gctgacctcatttaa
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