Daphnia magna (water flea): 116919941
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Entry
116919941 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116919941
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
116919941
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
RuvA_C
zf-CCCH_2
zf-CCCH_4
zf-CCCH
DUF7070
Motif
Other DBs
NCBI-GeneID:
116919941
NCBI-ProteinID:
XP_032781858
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Position
LG4:10623290..10628601
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AA seq
801 aa
AA seq
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MVRDSIPACRTLSDGARKSYARRKLESEDSSYDSDYECSDSLSLALTSLSGDLNQSAPGA
AQQHEDVSRTVSDTLAAEFSEYVSVYNPPFHRLKEAARDDSGDSDESPPAPANDPSYSSR
VEFALKLGYTEQQVQKALVKLGQPTQNELLAELIRLASLAGPTSSEAIETQTDCFRSHRP
LSITSSDEAVLRHVVIDGSNVAISHGNKEVFSCRGIQLCVDWFRARGHHEITVFVPMWRK
ETSKIDAPIANQEILLELEKERMLVFTPSRQVGGRRLVCYDDRYILRLAAETDGIVVSND
NYRDLVSENPEYRKIVEERILMYSFVNDRFMPPEDPLGRNGPKLDRFLRKPPAKGSAEAT
GPPCPYGKKCTYGNKCKYYHPERGNVPQKTISERLVEQTAHRHLLEVKARNSGQTVARKS
GFIRESSPTCKTFSLPLAKEVAGASSGKPPSPVKKTPLARTKSIVPSLTVLPPELIEERP
VQDDTNPPEEQANKATILKSRSVENMARLSPVRSAVPAQQQQIPHGLMLHAPPPAFSVPP
PPMTMDGFGSSSMNWNRSGHVPLGQQLSDSPSATSSSGLEDADDSARSNPHRKVQRQLTL
NPLNPACDPRLYTLKGLAPPYPPPPISVHSIVTRNASAPAPTSQLHTRTHPHLQPTGANN
HMQRLNSTSDTQLNLYGATASTSVAIAQDWNSQGLTDPFDEWTTSPPPPLPPVQPTQHVH
QHSWASRTSSLPAHQHLSSSPLQAFGENGPNSKSEARYKLFYHLAAIFPEEQVRQVMSLM
PDETNAQKICAAILALYPKDN
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgggattccattcccgcttgtcgaacattaagcgacggtgctcgtaaaagttac
gcccggcgcaaactggaatcggaagactcgagttacgattccgattacgagtgttccgat
agccttagcttggcattgacaagtctgtcaggtgaccttaaccaatctgccccgggtgca
gctcaacagcacgaagacgtttcgcgaaccgtgtccgacacgctggccgccgagtttagt
gaatacgtcagcgtctacaatccacctttccacagattgaaagaagcggcacgtgatgat
tccggtgactctgatgagagccctccagctcctgccaacgacccgtcatattcaagtcgg
gtggaattcgccttgaaattgggttacaccgaacagcaagttcaaaaggctctcgttaaa
ctaggccagccaactcaaaatgaactcttggccgaattgattcgtttggcatcgctggct
ggaccgacttcgagtgaagcgatcgaaacgcagacggattgctttcgatcacatcgtcct
ttgtctatcaccagctcagatgaggcggtgttaaggcatgtcgtcattgatggaagcaac
gtcgccattagtcatggcaacaaggaagttttttcctgccggggaatccagctgtgcgtt
gactggttccgcgccagaggccaccatgaaatcaccgtcttcgtacctatgtggagaaaa
gaaacgtccaagattgatgcgcccatcgccaatcaagagattttactagaattggaaaaa
gaaaggatgctggtttttaccccgtctaggcaagtcggtggccgtcgtttggtatgctat
gacgaccgttacattctgcgtttagcagccgagacggacggtattgtcgtgtcgaacgac
aactaccgcgatctggtgtcggaaaatccagagtaccgcaagatcgtcgaggagcgcatc
cttatgtactcgttcgtcaacgaccgatttatgccaccggaagatcccttgggtcgtaac
ggacccaaactggatcgcttcctgcgcaaaccgcccgccaaaggttctgccgaagctacg
ggtccaccttgtccatacgggaagaaatgtacctatggaaacaaatgtaaatattatcat
ccggagagaggcaatgtcccgcaaaaaaccatcagcgagcggctggtcgagcaaaccgcc
caccgccacctgctggaagtcaaagctcgaaatagcggccaaacagttgcaagaaaaagt
ggattcattcgcgaatcttccccgacctgcaagacgtttagccttccattggcgaaagaa
gtagcgggggcttcatccggcaagccacctagccccgtaaagaaaactccgctagcgcgg
acgaaatccatcgtgccctcgttgacagttcttccaccagaattgatcgaagagaggcct
gttcaggatgacacgaatccgccggaagaacaggccaataaggcgactattctcaagagc
cggagtgtggaaaacatggctaggctttcgccagttcgttcggccgtcccagcccagcaa
cagcagattccgcacggattaatgcttcacgctcctccgcctgctttttccgtccctcct
ccgccaatgacgatggatggatttggaagcagcagtatgaactggaaccgaagtggacac
gtccctttgggtcaacaattgtcagattctccctcagccacatcttctagtgggctagag
gacgcggacgattccgcgcgttccaatccgcatcggaaagtccaacgtcaactgacattg
aaccctttgaatccagcgtgcgacccgcgattgtacaccttaaagggcttggctccgcct
tatccgccaccgcccatttccgtccattcgatcgtcactcgcaatgcatccgccccggcg
ccaacatctcaacttcacacgcgtacccatccgcacctgcagccaaccggagctaacaat
catatgcagcggttgaatagcacgtcggacacgcagcttaatttgtacggtgccacggcg
tcaacttccgttgccatcgcacaggactggaattcacaagggctgacggatcccttcgac
gaatggaccacctcccctcctccgccattaccccccgttcagccgacgcaacatgtacac
caacattcttgggccagccgaacttccagtttaccagctcatcaacacctgtcttcatct
ccgttgcaagcgttcggcgagaacggtcccaacagcaaaagtgaagcgcgttacaagctg
ttttatcatttggctgccatctttccggaagaacaggtacgccaagtgatgtcacttatg
ccagacgaaacaaatgcgcagaaaatctgcgctgccattttggcactgtatcccaaagac
aattga
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