Daphnia magna (water flea): 116919964
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Entry
116919964 CDS
T07514
Name
(RefSeq) nuclear pore complex protein Nup50
KO
K14295
nuclear pore complex protein Nup50
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116919964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116919964
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116919964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP50
Ran_BP1
PRIMA1
Motif
Other DBs
NCBI-GeneID:
116919964
NCBI-ProteinID:
XP_032781891
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All DBs
Position
LG4:complement(10675384..10677282)
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AA seq
443 aa
AA seq
DB search
MAKRTATRELNHDNWDDDEEEEEAGTFKQASSEALQGRVIKQARRRITGNDGEAKKGFSG
FAGFGVRGGSESNAFTSFAVKVPSSTEKIKTENGENTPSSNADNGAKEKEYLTSLKVLNE
TVTSWITDHVKKNPCCVLTPIFQDYEKHLRDLEAKRTSTASDESQAADTTKATTAFSAGK
VNNEKLDDQKFQFGSKSAETSKPSFNFLGNGTTPSKPPSTFSFSSSTPATSSPSNFSFGI
PKSDSGATTSSSMFSFKATTAASTTSPPSTAASFSFSGSKPSVTAPAFSFGFTSNKPSTD
QKKDAEDKKGGEEEDDEDAPPKVEIKQVQEEDAFYSIRCKLFYKKDNNYTEKGVGTLHLK
KVKDEKTQLVIRADTSLGNILLNIILNPQLTTQRVGKNNVMFVCIPNPPIDPKTPPAPTP
MLLRVKTDTEADELLAKLNEAKK
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcgtacggcaaccagagaattaaatcacgacaactgggatgatgacgaagaa
gaagaagaggcgggtacctttaaacaagcctcttccgaggccctgcaaggacgggtgatc
aaacaagcccggcgaagaattacaggcaatgacggagaggcaaagaaaggattctctggg
tttgctggttttggtgtgcgaggaggatctgaatcgaatgcattcaccagctttgctgtt
aaagttccaagttctactgaaaaaatcaaaacagaaaatggagaaaacacaccaagctct
aatgcagataatggggcaaaagagaaagaatatctcacaagccttaaagttttgaatgaa
actgtcacttcatggattacagatcatgtcaagaagaatccatgttgtgtgcttacccca
atcttccaagattatgaaaagcatttaagagatctggaggcaaaaagaacttcaacagca
tcagatgaaagccaagcagctgacaccaccaaagccaccactgctttcagtgccggcaaa
gtcaataatgagaagctggatgaccagaagttccaatttggctctaaatcagcagaaact
tccaaaccatctttcaacttccttggcaatggaacaacaccttccaaacctccttcaaca
ttttcattttccagttcaactccagcaacttcatcaccatcgaacttttccttcggcatc
cctaaaagtgactcgggagcgactacctcttcttcaatgttctcgttcaaagcaacaacc
gctgcttcaaccaccagtccgccgtcgactgcggcttcattctccttttccggatctaaa
ccttcggtaaccgcgccagcattttcgttcggtttcaccagtaataaaccatcaacagat
cagaaaaaggacgcagaagataagaagggtggcgaggaagaagacgatgaagacgctcca
ccaaaagtggaaattaaacaagtacaagaagaagatgccttttattccattaggtgtaaa
ttattctataaaaaggacaacaattatacggaaaagggggttggtactctacacttgaag
aaagtcaaggacgaaaaaacgcaattggttatccgtgccgacacttcactcggcaacatc
cttctgaatattattcttaacccacaactaacaactcagcgtgtcggcaagaataatgtc
atgttcgtttgtattcctaacccacccattgatccaaaaactcctcctgctccgacaccc
atgcttcttcgcgtgaaaacagacacagaagccgatgaactgttggccaaactgaacgag
gcaaaaaaatga
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