Daphnia magna (water flea): 116919982
Help
Entry
116919982 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: HEAT repeat-containing protein 1
KO
K14550
U3 small nucleolar RNA-associated protein 10
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116919982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dmk03009
]
116919982
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
116919982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_HEATR1
BP28CT
U3snoRNP10
HEAT_EZ
HEAT_EF3_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
116919982
NCBI-ProteinID:
XP_032781911
LinkDB
All DBs
Position
LG4:11263118..11270348
Genome browser
AA seq
2100 aa
AA seq
DB search
MTSLSRQLKKLAAPQTSLLKLDKKKPSLLFDPLEAANLDRDAVFEIGLSGLEDLEKLDIR
FSEFRNSLYSLTSKQFERSVHTVEINTKIDEEIERFLVLLSPYFTLRSSQKALEWLVNRF
HIHQFNTDAFIMCILPFHDTNIFVRAIQLIALRNQFGQWYWLRPLQKPGIPLPKNTLLNC
CAKDIGLIKLICANLDKATKIHSEKPSVLNVFIAFFASTIIGMVERSNGVSEEQLAILLP
SILNGLVSKFPDLVAGCYMIVAQLNRKANLSPRVAEDLLVSTIKGMTPSLALEAVTLLIV
LCDRQEKHTFAVSQIQKSFKSLLLSKELLPSIGTLASCYQVSSFISALIQGFVLELGQSA
KNLRFKKILTFLTNMIEEVRFIGDDSTVVVKSFICGYLEAIEKMDVASKKKLQTVIVSIL
DRLEKQYPVDFEKAIHLSTVDHAISVERKEEIRKLLGANWDVDHTSLFLKLNHSSAEVRL
DAIRSVVQAVQQGKVRNMSFAVSSIIERLTDTDALVVSEVLLLGENLFTILPSERQFSIL
RAALGNGLPGDSEIWNPVRLSLIKLLCSKTYVDKLNEDELVELFLALLPFLVAVGTMGLD
LTKQIAVSELKKHSPMLQALAQKIGCHKQNAQIEKEWQNDESITYNLHEVMRQVKPFSSE
QLNVKLGERILGCIQDPLTHPSLSVPAILVMAALIQGESNSLVATRMATRFVDVLFGMVK
TAKAYPRSEDKGKNRIRAFLLQARGKGVVAHDALLYGAMEVFQGLPIDYSKMFERQWMAL
TNVDDPNDASMLFLLSLFRFLVLGLTSKSTTPFQISLQTFFSRMEEAKTKLLFLSLVWNN
SDAPDSLKIVALKMGSLYLEQAAARNTWAIQYSSSVVPQLICCLTSTNPLIRQHALAIFK
VLGSSFSTSPKTYGTLIVEIHQAAEELKIDEEQVKVVLARHLCKKTATPTSAALFELLVL
NDVPDCVKQGLLKALEQVNSSEILTRLLPLIEELINKTEAPLPTIQSNILTMLLERFTPE
SAPIIAKPEGWNCFQKALRSSYNAIVTGEQQVVLSPQDIVIEVITKDFFRVLPTESIKLK
IFDELLEIIIDTDKTVTARQARRALKRISFDAALLMKQLEFKSQPIESKVDIKVSELRGR
RQRQQSLKPSQCLLWNRILAVLEMLQIKKEITSIHLLIAPLFDLLKICLDEEEQAPLEYS
KQLILSCLLSCCQKLPQGDSVKLASEFNTGLIVQCIRVSNNPQTHHQALLLLSLAAQLFP
SHVLHNIMAIFTFMGTSVLRQDDAYSFQVIAKTLESVIPTLIEASMKTAVEPVVTTVIHV
FADALPEVPEHRRIPVFDKLLTTLDPEIYLWLAPTLILSNMATQGPRLGRGLIKEDDKDR
IAPDVEFSLNVCHLYKPQVQLNACIRMIEYLQSLPVEKDERRRVASTENKDMTEGSSPFS
LDLHSTRQLCHFKLLMVNFISTLLSSNRLVEQLVELEEAEKPSLEKLYRKLVETALEYTQ
SISRQVDLPLKVTSAEQGPNPKFWRALLHRSYDVIDRVNSLLPRAMFISVVHSLLSHSLP
SIRRRAMELLSAKLQHQSNFFSLPLDESVLLELIPSLTVIANGQGSNEEAALNQQTAFFT
LKLLCRCLGPSASTSFRPVLDVVVDTISPVKSSSTTVLASAFLCLAELIQNMGVQSLPYL
PRYGANLVARLGDISSIENHDLLLLSVVTAVYKLVETLPQFLVPYLPPILKQICYLSAKQ
PVNEKPSQLQSRLQNIRHSLATASVPRSLINGVTQVYAEVTMIESGTFVPSPSIGPLMSI
LSESFAAMSSEELTIQLPALTSFFIKALDTRSLLSVQQATIEQMNAAEEPVVSALVSLVL
KLSEASFRPLFFQLYEWATRITDMRKERLVSFYNITMQIAEKLKGLFVVFAGHFIRNAAQ
VIADTNYTQKGSLPFTGPHAEGNTTMLLEYVLRCLYRVCLHDNENFINKERFETLMEPLV
DQLDNQLGNEDVVRRRVKDLLVPLLAQMAVAASDDYLWKALHYQLLLKTRSNSPHVRLGS
LSALSALVEKLGEDYLALLPEAIPFLAELLEDDVHEVEVAAQTTIANMENMLGEPLQKYF
NT seq
6303 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtttatcacgtcaacttaaaaagcttgcagctccccaaacctctttattaaaa
cttgacaaaaagaagccttcactcctctttgacccgctagaagcagcaaatttagacaga
gatgcagttttcgaaatcggcttgtcgggtcttgaagatctggagaaacttgacatacga
ttcagcgagtttcgcaattctctttattcacttacatcaaaacaatttgagcggtctgtc
catacagtggaaatcaatacgaaaatcgatgaagagattgaaagattcctagttttgtta
tctccatattttacattgagaagttcccaaaaagcattggaatggcttgtgaatcgtttt
catattcatcagttcaacacagatgcctttatcatgtgcatactaccgttccatgacaca
aacatttttgtgagagctattcaacttattgcattgagaaatcagtttggtcaatggtac
tggctccgtccccttcaaaagcctggaattccactaccaaagaacacacttctcaattgt
tgtgcaaaggatattggactcatcaaactcatttgtgcaaatttagataaagctacaaaa
attcattcagaaaaaccatccgtgttgaatgttttcatcgcttttttcgcctcgacaatc
atcggcatggtggagcgctccaatggagtaagcgaagagcaattagctattcttcttcca
tccattcttaatggtctcgtcagcaaatttcctgatcttgttgctggatgttacatgatc
gtcgcacagttgaatagaaaagcaaacttgagtccacgagttgcagaagatttgcttgta
tcaacaataaaaggcatgactccttcattggcattagaagccgtcacgttacttattgta
ttgtgtgatcggcaagaaaagcatacatttgccgtctcccaaatccaaaaatctttcaaa
tctctcctgttgagtaaggaactgcttccatcaattggcacccttgcatcctgttaccag
gtttcgtcgttcatctcggccttgatacagggattcgttttggagctagggcagagcgcc
aagaacttacgcttcaaaaaaatacttacttttttgacaaatatgattgaagaagtacgt
ttcatcggggatgattcaacagttgtcgtcaagtcttttatttgcggatatttagaagca
atcgagaaaatggacgtagcttctaagaaaaagttgcaaacggtgatcgtttcgattttg
gatcgtctggagaaacaatatcctgtcgattttgagaaagctattcatctgtcgacggtt
gatcatgccatcagcgttgagcgcaaggaagaaatccgaaaattgctgggagcgaattgg
gatgtggatcatacctcgctctttttgaaactgaatcatagttctgctgaagtcagacta
gacgcaattcgatcagttgttcaagctgtgcagcaggggaaggtacgcaacatgagtttt
gccgtctccagcattattgagcgacttactgacactgacgctctagtagtcagtgaagta
cttcttcttggtgaaaacctgttcactatacttccaagcgagagacagttttcaatattg
cgggctgccctgggtaacgggctgccaggagatagtgaaatctggaatcccgtccggcta
agtttaatcaaattgctttgcagcaaaacttatgtcgataaactcaatgaggacgagtta
gttgaactcttcttggcactgttacctttccttgtagctgttggtacgatgggattggac
ttaacgaagcaaatcgctgtctccgaattaaagaaacactctccaatgcttcaagctctt
gcccaaaaaattggatgccacaaacagaatgcacaaatcgagaaagaatggcaaaatgat
gaatctatcacctacaacttgcatgaagtaatgcgccaagtcaagccattctcaagtgaa
caattgaacgtaaaacttggcgaaagaatcctaggatgtattcaagatcctttaacacat
ccatctctatctgtaccggctattttggttatggcagcgcttatccaaggtgaatcgaac
tcattggtggccacccgaatggctactcgatttgttgatgttttatttggaatggttaaa
accgccaaggcgtatccgcgatcggaagacaaaggaaagaatcgcattcgtgcgtttctg
ctccaagcacgtggaaaaggagtcgttgcccatgatgcccttctttatggcgcaatggaa
gtgttccaaggccttccgattgattattccaagatgtttgaaaggcagtggatggcgctg
accaacgttgatgatcctaacgatgccagcatgctgtttttgctgagtttatttcgtttc
cttgtgttgggactgacttcgaaatctactacaccgttccagatatctctgcaaacgttt
tttagtcgtatggaagaagcgaaaacgaaactgttgtttctcagtctcgtttggaacaat
tcggatgctcctgattcgttgaagatagtagcccttaaaatgggttcattgtacctggaa
caagctgcagctagaaacacttgggctatccagtacagctcgtcagttgttcctcaactc
atttgctgcttgacttccactaatccacttattcgtcagcacgctttggccatctttaaa
gtactgggatcctcgttttcaacttcgccgaaaacatatggcactctcatagtcgagatc
catcaagctgctgaagaattaaaaattgacgaagagcaagtcaaagttgtcttggccagg
catttatgtaagaagactgccacgcctacgtccgcagctttgtttgaattgctcgtcttg
aacgatgttccggattgcgtaaaacaaggacttctgaaggctctcgaacaagtgaattca
tccgaaatcttgacgcgattgttgcctctgattgaggaactcatcaacaaaacggaggct
ccactcccaacaatccaatcaaacatcttaactatgctcttggaaagattcacccccgag
tctgcccctattatcgctaagcccgaaggctggaactgtttccaaaaagcactacgttca
tcctacaatgccatcgtgactggagagcaacaagttgttctctcacctcaggatattgtc
attgaagttatcaccaaagactttttccgagttctacccactgagtccattaagctcaaa
attttcgatgagttgttggaaatcattatcgatacggataaaacggtgacggccaggcag
gcacgacgtgcattaaaaagaatttcatttgatgcggctttgttgatgaaacagcttgaa
ttcaagtcgcagccgatcgaatcgaaggtggatattaaagtgagtgaactgagaggacgg
cgccaacgccagcaatcacttaagcccagtcagtgtcttctttggaacaggatcttggcc
gttttggaaatgctgcagatcaaaaaagaaattaccagtattcatttgttgattgcccca
cttttcgacctgttgaagatttgcctggatgaagaggaacaggctccgctagagtattca
aaacagttgatcctctcttgtctgttaagctgttgtcaaaaacttcctcaaggagatagt
gtgaaactagcatcggaattcaacacaggcctgattgtacaatgcatccgcgtctcgaac
aatccacaaacacaccaccaggctctacttctgctatccctggcagcccaactgttcccc
agccacgtgttacacaacatcatggccatatttacattcatgggcacatcggtgttgcgt
caggatgatgcctacagcttccaagttatcgccaaaacacttgaatctgtcatcccaacg
ctgatcgaagcttcaatgaaaactgccgtagaaccggtagtgacgaccgtcattcacgtt
tttgctgacgctcttcccgaagtgcctgaacatcgtagaatccccgttttcgacaagttg
ttgacaacattagatccagagatttacctgtggttggcacctaccctcatcctctcgaat
atggctacacaaggaccacgactgggtagaggattaatcaaggaagacgacaaagaccgc
atcgctcctgatgtagaattctctttaaatgtctgccacctgtacaaacctcaggtgcaa
ctcaatgcgtgcataaggatgattgagtacttgcaatcattgccagtggagaaagacgaa
cgacgtcgagtggcaagcacggaaaataaagacatgacggagggaagctcgccgtttagt
cttgatcttcacagtacccgacaattgtgccactttaaattgctaatggtcaatttcata
tctacgcttctatcgtctaaccgactggttgagcaactggtagagttggaagaggcggaa
aaaccttcgcttgagaagctttatcggaaattggttgaaacagcattagagtatacccaa
tcgatttcgcgtcaagtggatctaccactcaaagtcacttcagccgaacagggtccaaac
ccgaaattttggcgagctttgcttcaccgatcttatgacgtcattgacagagttaatagc
ttgcttcctagagctatgttcatctcggtggtgcactctttattgtcgcattctttacca
tctatccgacgtcgtgccatggaattgctgagtgctaaacttcaacatcaatccaacttt
ttctctctacctctagacgaatcagtcctgctggaattgattccttcactgactgtcatt
gctaatggacagggatcgaacgaggaggcggctcttaatcagcaaacggctttctttaca
ctcaaattgttatgccgttgtttgggaccatcggccagcacttccttccgtcccgttttg
gatgtcgtagttgatacgatttcacctgtaaaatcaagttcaaccactgtcttggcatcg
gccttcctctgcttggctgaacttattcaaaacatgggcgtccaatcgctaccgtatctt
cctcgttacggtgctaacctggtagcccgtttaggagacatatccagcatcgaaaaccac
gatttattattgctcagtgtagtaacagctgtgtacaagttggttgaaactttgccacag
ttcctcgtgccctatctgcctcccattctaaagcagatctgctacctgtcggccaaacaa
cctgtcaatgaaaaaccatcgcagttgcaatcgcgtcttcagaacattcgacattcgctg
gcaacggccagcgtacctcgttcattaattaatggagtaacacaagtctacgccgaagtg
acaatgattgaaagtggaacattcgttccgtcaccatccatcggcccgttgatgtccatc
ctctcggaaagctttgccgccatgagctctgaagaattgaccatccaactacctgcttta
acgagtttcttcatcaaggcattagatactcgttcgttattgagcgtccagcaagcaact
attgagcagatgaatgcggcggaagagcctgttgtttctgcattagtatctttggtactg
aagctctcggaagccagtttccgtccgctgtttttccagctgtacgaatgggctacgaga
atcacggatatgcggaaagaacgtctcgtttcgttttacaacataacgatgcaaatcgcc
gaaaagttgaagggtctctttgtcgtctttgctggacatttcatccgcaatgcagcccag
gtgattgcggatacaaattacacgcaaaagggatcgttgccattcacgggcccacacgcc
gaaggcaacaccacgatgctgctggaatacgtgctgagatgcctgtatcgcgtttgtttg
cacgacaatgagaatttcatcaacaaggaacgatttgaaacgctgatggagccattggtt
gatcaactggacaatcagcttggaaatgaagatgtcgtacgacgaagagtcaaggatcta
ctcgtccccttgctggcccagatggccgttgctgctagtgatgactatctgtggaaggca
ttgcattatcaattgctgctgaagaccagaagtaattcacctcacgtccgcctgggatcg
ctgagtgctttgtccgcgctagtcgagaaactcggagaggattacctggccttgttgccg
gaagctattcccttcttggccgaactgcttgaagacgatgttcacgaagtagaagtagca
gcccaaacaacgattgccaatatggaaaatatgctgggcgaacctttacagaaatatttc
tag
DBGET
integrated database retrieval system
