Daphnia magna (water flea): 116920056
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Entry
116920056 CDS
T07514
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
116920056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dmk03009
]
116920056
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
116920056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
WD40_WDHD1_1st
Beta-prop_EML
WD40_Prp19
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_VPS8
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
EIF3I
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
DPPIV_N
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_IFT122_2nd
Beta-prop_SCAP
Beta-prop_EMC1_N
Beta-prop_WDR41
KNTC1_N
L_protein_N
Motif
Other DBs
NCBI-GeneID:
116920056
NCBI-ProteinID:
XP_032782008
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All DBs
Position
LG4:complement(11506562..11509809)
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AA seq
704 aa
AA seq
DB search
MDKNLFRIHSTRFYDVEPKAIHSMAFESNRLALSRSDNSIEIWNMTHSPHIEKLIPGSTE
GSIEALVWSKGRLFSTGLHGFVVEYDLIALSPKASYAVTSGSAWCLAVNKAHTHLAAGTE
EGYVCLFEIYEESLMFFKTMDKQEGRILSLSWHSSGDFIVTGSSNAIRVWNVQTGHAVNR
LSLGRVDHFKETLVWCIAITDDFVIITGDSRGMTSFWNGKLGTLIDEVNAHKADVLCLCL
SEDQKTLYSAGVDPVIVLFARVSAGGRDQWIRSVQRAIHTHDVRSLALAGPKLLSGGVDA
YLCISSYPPKALSRYPPLPQAPCVQMAQGKRQLLLRYPTSLDVWQLGAAAPSVHHLSANT
FLKLSQEPARLLQLKAKDDEWIVCATVSPAGDYVAYATESNVYIYHFIQSAGTLQLKKLL
PPEEVSTCHRMMFIHQRGSEPARLLLATPKSTLQLIDVSSTEPMKLVHTFNRETTNGKFA
MEDCIHLMDCSSDGRFAAVADHKSNVVVLDVQSFQMYVTLPRYQSHPTALAFNPSCDLMV
VAYADHKIVEYDVPNRQYTSFSKKLSEHLPVQWLNRSCAVRHITFDVRHPDVIILHDDSV
IYTIDKNKEFSEPDAKITKFDTGTEDSLDAPPVPFKAPSAAQQQKMSTAGGGSSSSCFGM
SKKYKHLAYFGALDVGGELVAVEVSPLALEKHLPPALYKKRFGV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaatcttttcagaattcacagtactagattctatgatgttgaacccaaagcg
atacacagcatggctttcgagtctaaccggctagctctttccagatcagacaatagcata
gaaatatggaatatgacacattcacctcacattgagaagttaataccgggttccactgaa
ggctccatcgaagcgctggtgtggtctaagggcagactcttctccacaggtctacatggt
tttgtggtcgagtatgacttgatcgcactttcacctaaagccagctacgcagtcacgtca
ggctctgcttggtgtctggcagtcaataaggcccatacacacttggcggctggaactgaa
gaaggatatgtctgcttgtttgaaatctacgaggaaagcttaatgttttttaaaactatg
gacaaacaagaaggtcgcatcctctctttatcgtggcacagttctggcgattttatcgtc
actggatcctccaatgcgataagagtgtggaacgtacagactggccacgccgtcaatcgc
ctatcccttggccgagtcgatcatttcaaagaaacgcttgtttggtgcattgcgatcacc
gacgatttcgtcatcatcaccggggattcaagagggatgacatccttttggaacggcaaa
ttgggcactctgatagacgaagttaacgctcacaaagccgatgtactctgcctatgtctc
tctgaagatcaaaagactttgtactctgcaggagtcgacccggtaatagtgctttttgct
cgtgttagtgctggaggtcgagatcaatggattcgatctgttcaacgtgccatacacact
cacgatgttcgcagccttgccctagccggtcccaaattattatccggaggcgtggatgcg
tatctttgcatctcatcatatcctccaaaggcgttaagtagatacccgcccttacctcag
gcgccatgcgtgcaaatggctcaaggcaagcgacagctgttgctacgctacccgacgtcg
ttggatgtatggcagctgggcgcggccgccccgagcgtccaccacctaagcgccaatact
tttttgaaactatcccaagagccggcccgtctgttacagctgaaggctaaagatgacgaa
tggattgtctgcgctaccgtgtcacccgctggcgattacgtggcctacgctaccgagtcc
aacgtctacatttatcatttcattcagtctgcaggaacattacaactaaagaagctgttg
ccaccggaagaagtcagcacctgccaccggatgatgttcatccatcagcgcgggtctgag
ccggcccggcttctattagctacacccaaatcgacgttgcagttgattgatgtttccagc
acggagccgatgaaacttgtgcacaccttcaacagggagaccaccaatggcaaattcgcc
atggaagactgcatccatttgatggactgttccagcgacggccgttttgccgccgtggcc
gatcacaagagcaacgtcgtcgtgctggatgtgcaatcgttccaaatgtacgtgacgttg
cctcgctatcagagtcatccgacggcgttggccttcaacccgtcgtgcgaccttatggtc
gtggcctacgccgatcacaagatcgtcgaatatgacgtgcccaatcggcagtacacaagc
ttttcgaagaaattatcggaacatctgccggttcaatggctgaaccgatcgtgcgccgtc
cgccacatcacattcgatgtccgacacccggacgtcattatcctacacgacgacagcgtc
atctacacgattgacaagaacaaggaattctcggagccggatgccaagattaccaaattc
gatacggggacggaggacagcctggacgctccacccgtgccgttcaaggcgccttcagca
gcccagcaacagaaaatgtcgacggctggtggcggatcatcttcttcgtgctttggcatg
tcgaagaaatacaaacatctggcctactttggtgcccttgatgtaggcggtgaattggtg
gccgtcgaagtcagtccattggctctggagaaacacctgccgccggcactctacaagaaa
cgattcggtgtttaa
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