Daphnia magna (water flea): 116920217
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Entry
116920217 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116920217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116920217
03036 Chromosome and associated proteins [BR:
dmk03036
]
116920217
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116920217
Coactivators
SAGA/TFTC/STAGA complex
116920217
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116920217
STAGA complex
116920217
TFTC complex
116920217
SAGA complex
116920217
SLIK complex
116920217
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40_Prp19
TFIID_NTD2
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_VPS8
WD40_MABP1-WDR62_1st
DSE1_N
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
CFAP251_N
Beta-prop_IFT140_1st
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_HPS5
Ge1_WD40
ASA1
PAC11
TRM82_WD
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
PROPPIN
WD40_RFWD3
WD_LRWD1
LisH
Tricorn_2nd
LisH_PAC1
Beta-prop_ACSF4
LisH_SSDP
LisH_TPL
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
116920217
NCBI-ProteinID:
XP_032782254
LinkDB
All DBs
AA seq
696 aa
AA seq
DB search
MEYSMNQLPQAINSDAKTQSSENQNSEVVSDNSGGQTLDSENVDSNTLAAVLQFLQKHNL
KGTADALKKEARLKEDQLRDAQALQVDSEATNLLSSYKSEGDPNAYEKAYLSYRRFVESS
LDVYKHELSLVLYPLFVHMYLEMIYNNHENEASKFMERFSIDQEDYYQEDLKKVSFITKK
EHMKGSDLMENFKSSQFTVRMSRDTYSVLKRFLQDKNQSIVMNVIQEHLYVDMYEGVPRN
KAQVESTAGAMEGEANRQVNKTKIYYGLLKEPDIQLSVVEEEEDGEPGEGGEKPKKKKPK
KDPLLNKKAKSDPNAPPASRLPLPDLRDIDKLEKVRALREASKRVALGPDSLPSICFYTM
LNCAETVTCVEFCEDSSLLAAGFSDSILKVWSLVPQKLRAMKPAEQLADIDKEAEDVLVR
MMDDKTGETMKGLYGHCGPVYSASFSHDRTLLLSSSEDATIRLWSLQTWTCLVVYKGHIY
PVWDVRFSPHGYYFSSVGHDRTARLWATDHHQPLRIFAGHYSDVDVVQFHPNSNYVATGS
SDRSVRLWDCVSGNCVRLMTGHKGTVSALCFSTDGRFLASGGADQKVLLWDLAHGHLLAD
LPGHTMTISSLAFSRDGTVFATSSLDGSIQLWDFFRMTDESSLEDVNISGHNPDLLKRSN
VIESLRLARYPTKATPVMSLHFTRRNLLLAAGMFEG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggagtatagtatgaaccagctaccccaagcgattaattcagacgctaaaactcaatca
tcagaaaaccaaaacagtgaggttgtgagtgacaatagtggcggccaaactctagattca
gaaaatgttgattccaatactcttgcggccgtcctacaatttctgcaaaaacataacctc
aaaggtacggctgacgcactgaaaaaagaagcccgactcaaggaggatcaattgagagat
gcgcaagcacttcaggttgattctgaggcaacaaacttactctcatcgtacaagagtgaa
ggggatcccaatgcctatgaaaaagcctaccttagttacagaagatttgtcgaaagctcc
ttagatgtttataaacacgagctgtctttagtgctgtatccactctttgtccacatgtat
ttggaaatgatttacaacaatcacgaaaatgaagcttctaaattcatggaacgcttttca
attgaccaagaagattattaccaagaagaccttaaaaaagtttcttttatcaccaagaaa
gaacacatgaagggcagtgaccttatggaaaatttcaagtcaagccagttcacggttcga
atgtcacgtgatacttactcggttttgaagcggtttttgcaggacaaaaaccaatctatt
gtcatgaacgtcattcaggaacatttatacgtcgacatgtacgaaggggtaccccggaac
aaagctcaagtggaatctacggcgggagccatggaaggcgaagccaatagacaagtaaac
aagaccaaaatctattatggcctgctgaaagaacccgacattcaactttcggtggtagaa
gaggaagaggatggagagccgggagaaggtggcgaaaaacccaaaaagaaaaaacctaaa
aaggatcctttgctcaataagaaagccaaaagcgaccccaatgctcccccagccagtcga
ttaccattaccagatttgagagatatcgacaaactggagaaggtcagagctctacgtgaa
gccagcaagagggtggctcttggtccagacagcttgccatccatttgtttctacacaatg
ctgaattgcgcggaaacggtaacgtgtgtcgaattttgcgaagattcttctcttctcgct
gcggggttttctgattcaatcctgaaagtgtggagcttagtgcctcagaaacttcgtgcc
atgaaaccagccgaacagttggccgatattgacaaggaggcagaagatgtccttgttcgt
atgatggatgataagacgggtgagaccatgaaaggtctctatggccattgcgggcctgtt
tattctgcctcgtttagtcacgaccggacgttactgctttcatcctcggaagatgccacc
attcgtctctggagtttacagacgtggacttgtcttgttgtttacaaaggccatatttat
ccggtgtgggatgtccgattttcaccacatggatactacttttcatcagtcggacacgat
cgaactgcccgtctgtgggctactgatcatcatcagcccttaaggatattcgccggccat
tattcagatgtcgacgtagtccaattccatcccaattcaaattatgtcgcaacagggtct
agtgacagaagcgtccgcctatgggactgtgtctctggcaactgtgttcggctaatgact
ggccataaaggaactgtatcggcgttgtgtttttcaaccgatggtcgttttctagcgtcc
ggtggagctgatcaaaaagtcctgttatgggatctggctcacggtcacttgttggctgac
ctgcctggccacaccatgacgatctctagcctggccttcagccgagatggaactgtcttt
gctacgtcctctttagatggttctattcagttgtgggatttcttccgaatgacggatgaa
tcctctttagaggatgtcaacatttcaggacacaatccggacctgctgaaacggagcaac
gtcatcgaatctcttcgactggcccgttatccgactaaagccacacctgtcatgtcactg
catttcacgcgaagaaatttgctcctagccgccggcatgttcgaaggctaa
DBGET
integrated database retrieval system
