Daphnia magna (water flea): 116921064
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Entry
116921064 CDS
T07514
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116921064
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116921064
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116921064
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
116921064
NCBI-ProteinID:
XP_032783149
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Position
LG4:2431823..2436693
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AA seq
915 aa
AA seq
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MASSANVPEIPQDQRFISFYGNLPEKHATTLRFFDRGEYFTLHGQDALLASRDYFKTHSV
VKMLGYGVKKLESVVLNKSHFENFAREVLLVKHYCIEIYTGSKSDWSLQYQASPGNLTQV
EDLIFGSTDITSQVGILAFKIGTENQVGCSYIDTYARKFLVAQFADNDAFSNLESLIVQL
SPKEVLIPPGDAYIPAKVVLNRHGLLVNESKKAEFSSAETVRLLNRLLRFKKGQQESAAA
LPEVDLEHSMAALAALVKHLDLMADETNFGQYTLLSFDFTQYMRLDSAASAALHLTSYGS
ESSIMLTAKSGAPRTIAALLNKCRTSGGQRLLAQWIKQPLTDKNRIERRLDIVETFVNNV
QLRQTITEDHLRRMPDYQRLAKKLQKAKANLQDLFKLYLGLVRLPVLVDCLLEHEGEHSA
VILAVLIQPLRNANEKLVKLKELVETTIDLKQADQGEFIIKADFDDQLGELKKELDESGS
KAEGILSRVASDLKLETSKSVKLESNAQIGYYFRVTLKDEKNLRNNRNYHTIDTNKGGVR
FRNSALEDVNEVYLRVRREYEQQQSSVVKEILSVAAGYVEPLQSLNDALSQLDVLTSFAV
CSISAPIPYVRPTILEKGSGNIELIQVRHPCMELQDGVNFIPNDAVFEKDGHRFYIITGP
NMGGKSTYLRSVGVAVLMAQVGCFVAASSATISIVDAILARVGAGDCHLKGVSTFMAEMI
ETANIIRTATKDSLVIIDELGRGTSTFDGFGLAWAIAEHIAVNIQPCALFATHFHELTAL
ADEVPSVDNLHVTALTGDNTFTLLYRIQPGSCDQSFGLHVAEMVHFPQEVLQTAQMKAKE
LEAIKPNYNGNGFDEPTSKRHRSDIGESDTMLRKYLERAKTIMDKKNDVNCEEMQELRKE
IMKTTDPFIRNVLNM
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcgagctctgcgaatgtaccagaaatcccccaagatcagagattcataagtttctac
ggtaaccttcctgagaaacatgccaccacacttcgtttctttgacagaggggaatacttt
accttgcatggtcaagatgctcttttggcatcaagagattatttcaaaacacatagtgta
gtcaaaatgctgggctatggggtgaagaaattggaatctgttgttctcaacaaaagccac
tttgaaaactttgcccgtgaagtattgcttgtcaaacactactgcatcgaaatttacaca
ggatccaaaagtgattggtctcttcaatatcaagcatctcctggaaaccttacccaagtg
gaagatctgatttttggatctactgatattacatctcaagttggcattctagctttcaaa
attggcacagaaaaccaagtaggctgtagttacattgacacctatgcaaggaaatttctt
gttgcacagtttgcagacaacgatgcattttcaaatttggaatcactcattgtccagcta
agccccaaggaagttctaatcccacctggtgatgcttatataccggcaaaggtggtactg
aatcgccatggccttctagtcaatgagagcaaaaaggctgaattttcatcagctgaaacg
gttcgattgctgaatcgtctcctgcgcttcaagaaggggcagcaagaaagcgccgctgca
ctacctgaagttgacttggaacattctatggctgctctagctgccttagtgaaacatctc
gacttaatggccgatgaaaccaattttggacagtacactctgcttagttttgacttcact
cagtacatgaggctggattcggctgcatccgctgccttgcatctaacgtcgtacggttcc
gagtcgtccataatgctgactgcaaaatctggagctcctcgtacaattgctgccctgctc
aacaaatgccgcacttctggtgggcagcgactcttggcccaatggattaaacaaccactt
accgacaaaaacaggattgagaggcggctggatatcgtggaaacattcgtcaacaacgtc
caattacgtcaaactataacagaggaccacctgcggcgaatgcctgactaccaaagattg
gccaaaaagttacaaaaagccaaagctaacctgcaagatcttttcaagttgtacttggga
ttggtgcgattgccggtgctagttgattgtttacttgagcacgaaggagagcacagcgct
gttattctggctgtactcatccaaccattaagaaatgcgaacgaaaagctcgtcaaattg
aaagagttggttgaaacgaccatagacttgaagcaagctgatcaaggcgaattcatcatc
aaagcagattttgacgatcaactgggagagctaaaaaaagaattggatgaaagtggatcg
aaggctgaaggtatcttgtctcgcgtggcatctgatctcaaacttgaaacatctaaaagc
gtcaaattggagagcaacgcccagattggctattactttcgagtcactttgaaagatgaa
aagaatcttcgcaataatcgcaattaccatacaatcgacaccaataaaggcggagttcgc
ttccgtaattcagctttggaggacgtcaatgaagtctatttgagagtccgccgtgaatac
gaacaacagcaaagttcagttgtcaaagaaattttatccgtcgcagcggggtacgttgaa
cctctccagtcgttgaacgacgccttatcccaacttgatgtactcaccagcttcgctgtc
tgttcaatcagcgcaccgatcccctatgtccgacccacaatcttggagaagggatcggga
aacattgaacttattcaagtaagacatccttgtatggaacttcaggatggagttaatttc
attcctaatgatgcagtattcgaaaaagatggtcatcgtttttacataatcactggaccc
aatatggggggaaagagtacttacctgcgttctgtcggcgtagctgtcctgatggcacag
gtcgggtgttttgtggctgcttcatctgctacaatatccatcgtggacgccattttagcc
cgtgttggagctggtgattgccaccttaaaggcgtttcaactttcatggccgaaatgatc
gagactgcaaacatcatacggacggcaacaaaagattctcttgtcataattgacgaattg
ggtagaggaacttccacctttgatggctttggattagcctgggccattgcagagcacatt
gccgtgaacatccagccatgtgcattgtttgcaactcattttcatgagctcacggcttta
gcagatgaagtgccatcagtagacaatcttcacgttacggcgctgacgggcgacaatacg
ttcacattattgtaccgcatccagccaggctcgtgtgaccaaagtttcggattgcatgtg
gccgaaatggtccatttccctcaggaagttttgcagaccgcccaaatgaaggcgaaagag
ttagaggcaataaagcccaattataacggaaatggttttgatgaaccaacatcgaaacgt
caccgatctgatatcggggaaagtgatacaatgctgcgaaaatatttagagcgtgcgaag
accattatggataaaaagaacgatgtgaattgtgaagaaatgcaagaactgcgcaaagaa
ataatgaaaactacagacccgttcattcgaaatgtgttgaatatgtaa
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