Daphnia magna (water flea): 116921091
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Entry
116921091 CDS
T07514
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1 isoform X1
KO
K14411
RNA-binding protein Musashi
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116921091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116921091
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116921091
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
PHM7_cyt
NID
Motif
Other DBs
NCBI-GeneID:
116921091
NCBI-ProteinID:
XP_032783191
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Position
LG4:2619671..2648439
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AA seq
552 aa
AA seq
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MDNMDAHSQSQHGDNTTEVPNDPGKMFIGGLSWQTSAEGLREYFSKFGDVTEVMVMKDPT
TRRSRGFGFVTFADAASVDKVLASAPHELDGKKIDPKVAFPRRAHPKMVTRTKKIFVGGL
SAPSTVDDVKNYFEQFGRVEDAMLMFDKQTNRHRGFAFVTFESEDVVDKVCEIHFHEINN
KMQVECKKAQPKEVMLPVNAARGRAATLRAGYGELLLLSAAAACSASAGNAVPGLTAAAA
ASSVPSVATAGGIGGGGGGGASMAGLGQLVVPSLSSPTGLHHGHNHSASALHSHILNNPA
LSSAALQLQQHQNQTSNSAHHHHHHHHSHHRGVGAGAGGGGGGGGGQSPGKAAAAGLSAA
AAALLGNGLVSYRYAPYSIPASSNSVHNSSSLSSAQAQVQAAQQQQAQAVAAQAAANEAL
AASMAGLAGHHMSTLHPHNFSGLYAHPLFAAQAAAAAAAAAGHNHATHATMQDVMAAHHH
HAAVQAAVNQANKQRVVAQATHGFLNNNNNSSNNNAAAATVVHGGGGVSQNGELNLSSFA
GLEGFYPVPVGL
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggacaacatggacgctcattcgcaatcgcagcacggcgataacaccaccgaagtaccc
aacgatcctgggaaaatgtttatcggcggtctcagttggcagacgagtgccgaaggcttg
cgcgaatatttcagcaaatttggcgatgtgacggaagtgatggtcatgaaagatcccacc
actcgtcgatccagggggttcgggttcgtgacgttcgccgacgccgcctctgtggacaaa
gtgctcgcctcagctccgcacgagctcgacggcaagaagatcgaccccaaagttgcattc
ccccgccgagctcaccccaagatggtgacccggacgaagaagatctttgtgggcggactc
tctgcaccatcgacggtcgacgacgttaaaaactactttgagcaatttggacgggtagag
gacgccatgttgatgttcgacaagcaaaccaaccgacaccggggtttcgcctttgtgacg
ttcgagagcgaggacgtcgtggacaaggtctgcgagattcacttccacgagatcaacaat
aagatgcaggtggagtgcaagaaggcgcaaccgaaggaggtgatgcttccagtgaacgcg
gcccgcggaagagccgccaccctgcgagccggctacggtgagttgcttctcttaagcgcc
gcggccgcttgctccgcttccgccggcaatgccgtaccggggctgacggccgccgccgca
gcgtcgtctgtgccgtctgtggccacggctgggggcattggcggcggcggcggtgggggg
gctagtatggctgggctgggccagcttgttgtgcccagcttgtcgtcgcccaccggcctg
caccacggtcacaatcattcggcctccgcccttcattctcacatattgaacaatcccgcc
ctctcctccgccgcgcttcaacttcaacagcatcaaaatcaaacgtccaactccgcccac
caccaccaccaccatcaccacagtcatcaccgcggtgtaggtgcaggcgcaggaggaggt
ggtggaggaggaggaggacagagtcccggcaaagcggcggccgccgggctatcggctgcc
gccgccgcgctcttaggcaacgggctcgtgtcgtaccgttacgccccctactcgataccg
gccagttcgaacagcgttcacaattcgagttcgttgagtagcgcgcaagctcaggtgcag
gctgcccagcagcaacaagctcaggccgtggccgcgcaggcggccgccaacgaagccctg
gccgcttccatggccggcttagccggccaccacatgtccaccctccatcctcacaacttt
tccggcctgtacgctcaccctctgtttgccgcccaggcggcggccgcggcagccgcagcc
gccggccataatcatgcgactcacgccaccatgcaagacgtgatggccgctcaccaccac
cacgcggccgttcaggccgccgtcaatcaagccaataagcaacgagttgttgcgcaagcc
actcacggcttcctcaataacaataacaatagcagtaataacaacgcggcggcggcaacg
gtcgtccacggtggtggtggtgtgtcgcaaaatggcgagctcaatttgtcgtcttttgcc
ggcctcgaaggcttttatcccgtcccggtaggtctttaa
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