Daphnia magna (water flea): 116921334
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Entry
116921334 CDS
T07514
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116921334
09122 Translation
03013 Nucleocytoplasmic transport
116921334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116921334
03041 Spliceosome [BR:
dmk03041
]
116921334
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
116921334
Spliceosome [BR:
dmk03041
]
Complex C
Other components
EJC/TREX
116921334
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
116921334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Glyco_hydro_67M
Motif
Other DBs
NCBI-GeneID:
116921334
NCBI-ProteinID:
XP_045028995
LinkDB
All DBs
Position
LG4:8635904..8639934
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AA seq
691 aa
AA seq
DB search
MDKTDFEKTRYEFLESISQALDFGEQPIIKALLVTNNTYLIGEADKKAIWDQAFRDKFLN
DSPFFSIPLFEKLLQLSLDCAVALICSPTLPVILLTDAFDILSLGKCEEIFYMVEMKVST
WKQELFFNQCKNTLLRLCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNVVSEFN
LDNLTTFGGKEDLSDGSDITEKEKDAMEVEESLGSDYNLYKKFWSLQDFFRNPNQCYTKI
PWKTFCLHTNDVLSAFSTIKLDERRNRSKWDEADVSADVGIDETSTNAGNVQQYFAKYLT
SQNLLELQLGDSNFRRYILLQFLIIFQYLDSPVKFKQETHKLSEEQTTWITEATDQVYRL
LKDTPPDGASFAQSIRHILKREELWSNWKNDGCPEFRPTIAPNTDDIPNDSSNGEKKTVA
VARPRRMKRSLGDQIREASKRHKCIIGNAEMNRLWNLCPDNMAACRSKDRDFLPTLEHYF
EEAIEQLDPSVESQYKRVNEANFGWRALRLLARRSLHFFTHGNTPITRLPDYLETHVRKL
AKDIQQSVNVLPNVKPEPVDDAGEVEQMEPEADPVSSTSEIEGGPDEANVKPDEVEEAVE
EENLGKKPILCTMEQLVLLAKEIGIKWKLLAPKLGFGPDEVEYFESETTEVELQAKKMFQ
IWLENETDATPENLLYSLEGLGMLNSAQGIL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggataaaactgatttcgaaaaaacccgctacgagttcctggaatccatctcacaagct
cttgactttggggaacaacccataataaaggcattgcttgtaaccaacaacacatatctg
attggagaagcagataaaaaagctatctgggatcaggcttttcgagataaatttttgaat
gattctccatttttttccataccattgtttgaaaaacttttgcagctgagcttagattgt
gctgtagctctgatatgttctccaacactgcctgtgatccttctcacagatgcctttgat
atcctatctctgggaaaatgtgaagaaatcttttacatggttgaaatgaaagtgtcaact
tggaagcaagagctattcttcaatcaatgtaaaaacaccttactgcgtctttgcaatgat
ttgctgaggcgcctatcccgtagccaaaatacagttttctgtggccgaattcttctgttc
ttagcaaaatttttccctttctctgagcggtctggactcaacgtagtcagcgaatttaat
ttagacaatctaacgacatttggaggtaaagaggatctttctgatggatccgatattaca
gaaaaagaaaaagatgcaatggaagtagaggagagtttgggctctgactataatctgtac
aaaaaattttggtctctacaagacttcttccgaaatcccaatcagtgttatacgaaaatc
ccttggaaaacgttctgcctgcacaccaatgacgttttgtcagccttttctacaatcaaa
ttggatgaacggcggaatcgttccaaatgggatgaggcagatgtgtcggcagatgtcggt
atagatgaaaccagcacaaatgctgggaacgtccagcaatatttcgccaaatatttgacg
agtcagaatcttttggagcttcagctgggcgactccaacttcagacgctatattctgctc
cagttcctgattattttccaatatcttgattcacccgtgaagtttaaacaggaaacacac
aaattgagtgaagaacaaactacgtggatcacagaggctaccgatcaagtttaccgcttg
ttgaaagatacccctccggacggagcttcgttcgcacagtccattcgtcacattcttaag
cgcgaggagttatggagcaactggaagaacgatggttgtccggaatttcgaccgaccatc
gccccaaatacggatgacatccccaacgacagtagcaatggcgaaaaaaagaccgtcgca
gtagcccgacctagacgcatgaaacgaagcttaggcgatcagattcgagaagcttccaag
agacacaaatgcattattggaaatgccgaaatgaatcgtctttggaatttgtgccccgat
aacatggccgcctgtcgttccaaagaccgagattttttacctactttagagcattacttt
gaggaagcgatcgaacagcttgatccttcagtggagagtcaatacaagcgagttaatgag
gcgaattttgggtggcgtgcattacgacttttagctcgaagaagtttgcactttttcact
catggcaacactccaattacacggctaccagattatttggaaacgcacgttcgcaagttg
gccaaggacattcagcagtcagtaaatgtgttgcccaatgtcaaaccggaaccagtggat
gatgctggtgaagtggagcaaatggaaccagaagcagatccagtatcaagtacatcggaa
atcgaaggaggaccagacgaagccaatgtaaaaccagatgaagtggaggaagcggttgaa
gaagaaaatttaggaaagaaacctattctttgcaccatggagcaactggttctcctggcc
aaggaaattggaattaaatggaaacttctcgccccaaaacttggctttggaccagacgag
gtggaatattttgaaagtgaaacgaccgaggtggaattgcaggccaagaaaatgtttcaa
atatggttggagaatgaaaccgatgccaccccggagaatcttctgtactcgcttgaaggc
ctcggcatgctgaacagtgctcagggtattttgtaa
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