KEGG   Daphnia magna (water flea): 116921987
Entry
116921987         CDS       T07514                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03030  DNA replication
dmk03410  Base excision repair
dmk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116921987
   03410 Base excision repair
    116921987
   03420 Nucleotide excision repair
    116921987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:dmk03032]
    116921987
   03400 DNA repair and recombination proteins [BR:dmk03400]
    116921987
Enzymes [BR:dmk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     116921987
DNA replication proteins [BR:dmk03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    116921987
DNA repair and recombination proteins [BR:dmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      116921987
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 zf-DPOE DNA_pol_B DNA_pol_B_exo2 RNase_H_2 APP_N Toxin_28 Zn_ribbon_3CxxC PX
Other DBs
NCBI-GeneID: 116921987
NCBI-ProteinID: XP_032784246
LinkDB
Position
LG4:complement(4191589..4200033)
AA seq 2239 aa
MVYQNTGKYRPDKSGKEKSSGGKEDQAESRIIRVNENKAIDEKYGFSAPKESGEKIGYLI
NMHTTEIFDASQQLISAVDYFFVQEDGSRFKASLPFKPYFYILPRKECIQEVSSFLCKKY
AGIIASVENCAKEDLDLPNHLVGLKQHFLKLSFLSVTDLMKVRKEIMPHARKNSSRTNTA
YSDMMAKCQNETEQDELNKKVADTMDNIIDIREYDVPYHIRVSIDMNICVGLWYAVKFKG
SETMSITRRDDIIDTPDTIVLAFDIETTKLPLKFPDPATDQIFMISYMIDGQGYLITNRE
IVAADVEDFEYTPKPEFEGPFIVFNEPNEISLIQRFLDHILEVKPHVIVTYNGDFFDWSF
MEARATFHEMNMAKMIGWERDKEGVYSCRPSIHMDCFNWVKRDSYLPVGSQNLKAVAKAK
LRYDPVELDPEEMCRMAAEQPQVMANYSVSDAVATYYLYMKYVHPFIFALCTIIPMEPDE
VLRKGSGTLCESLLMVQAFRANIIFPNKQVSMLQNWTDDGHLLDTETYVGGHVEALESGV
FRSNIPCRFRLIPQVFDMLLEGIERTIRHAVEEEEHVPIEQVTNLDEVIDDIKEKLISLR
DAPNRIELPVIYHLDVGAMYPNIILTNRLQPSAMVDESVCASCDFNQPGAQCQRSMSWMW
RGDFMPATRGEFQRIQQQLENEKFPPIIPGMPTRAFHQLTREEQSTKEKQRLSEYCRKAY
KKVRVTRTEERQQTVCQKENSFYVDTVRAFRDRRYEYKNLNKMAKKQIAEAIALGDAGEI
KSAKNREVLYDSLQLAHKCILNSFYGYVMRKGARWHSMEMAGIVCHTGAGIIRKARELIE
QIGRPLELDTDGIWCILPSSFPENYVIKTSNPKKSKITISYPGAILNVMVKDAFTNNQYH
ELVDPENLSYIQRDENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNFDGSLAELKGF
EVKRRGELQLIKIFQSSVFEAFLKGDTLETCYQAVAKIADYWLDVLYSKAENLPDSELFE
LITENRSMSRKLEEYGGQKSTSISTAKRLAEFLGDQMVKDAGLSCRFIISKKPEGAPVTD
RAVPLAIFQSELSVKRHYLKKWLKDNSLTDFDIRTILDWDYYIERLGGCIQKIITIPAAL
QGVANPVPRVQHPDWLHKRMLEKNDVLKQRRINEIFKTTAKPIYDPSSEDSAVVGDMEDI
GGGNGIGNNRPIVTSKRKRNISESANELDKNWREILGPPPPMGKAGGEEREMWIRYHKKK
WAIQIKQRVARRGKEANSNTGVSSTSNLGGILALESYTNLGGFLRRAQQTLLSSMWQILQ
VMETSQPGMFRLWALVGNELHQIRLTVPRIFYLNKKKPLEKEVTSESAIWRKVNRILPRS
HRVYNLYEYSVPEEVYQQNFNQLMADLSTSDNAGIYETQVPLDFRVLVQLGCVCAVDRSQ
RFIPTGDTESFNLSQLTFKTLAHHPYLESGIESLKYLYIYHYKSGNKVMLVLFSPPAKKA
NFFVVDTVRTNQMPNLANLYNEERLKRLSQADINESSVPARDYSFSIQVETDIRQVYRQM
NRLLQAYKEEKRGPTFVAIQSHQDLPTTASQIQTLNEFPLVPIHSTDPDGLYNVLDWQRV
GSKACLRHFLRLRSVLDANLEQCRYFHIPIGNLPSDANLFGADLFFARHLIRNNCVLWCS
PTARPDLGGKEADDNRLVTEIEDNTTTLVVNNAGVYSNVCIEMDVDALAVTTLLQSHHVL
DIEGTSSSTAFDVPQTSLKDMLNDTSGPELSNYSESAMCVTVFRVLKSVVASWLRDISVH
RNVFADFQVIHFYRWLRSPTALLYDPALRRMLQNLMRKYFVQLLAEFQRLGATVVYADFG
RIVLGTKKRRIPDALSYVSFVCASLHQKELFRSLELNVQHCWQLLVWLDPANYGGVKGKT
DSAKESEEGTEDTSFTEDEEEEGTAVEMNWDVVKYFPEDPPCQEYFNTVIATYISAIHDH
LAESYGDRMPGATPIRRIQSSQTQRSKVGPTPDSLKEFTRELIDQEIAQHLFRVVQKLHK
QLHGHHGTDGLSNPSLEFVKAVCRVFQLDTNIVEEVTRLRRNLLKLIGVGEFSQDAEWKD
SCMSYILPEVICPTCNHCRDIDLCRDPHESEDRGIPTWQCPLCKSSYDSDEIESMLLDVV
NRKTMSFVLQDLQCKKCKQIKRENLSQFCSCAGEFQLLQSSSTLLQTLAIFERVSKKFSL
TLLHETVDQLLKMNQKANK
NT seq 6720 nt   +upstreamnt  +downstreamnt
atggtgtatcaaaatactggaaagtacaggccagataagagcggaaaagagaaaagttct
gggggaaaggaagatcaagctgaatcccgcattataagagttaatgaaaacaaggccatt
gatgagaagtatggattttctgctccaaaagaatcaggggaaaaaattggatacctcatc
aacatgcatactacagaaatatttgatgcttctcaacagctgatcagtgcagtagactac
ttctttgtgcaggaggatggttctcgatttaaagcctcactaccttttaagccatatttt
tacatactaccaaggaaggaatgtatccaagaagtctctagttttctttgtaaaaagtat
gctggaattattgccagtgtagagaactgtgctaaggaggatttggatttgccaaatcat
ttagttggtttaaagcaacactttttaaagttgtcctttttgtctgtgactgatctgatg
aaagtgagaaaagaaattatgcctcatgctcgcaaaaacagttctcgaactaatacagct
tattcggacatgatggctaaatgccaaaatgaaacagagcaagatgagttgaacaagaaa
gtcgctgatactatggataatattatagatattcgagagtacgacgtcccataccacatt
cgtgtttcgattgacatgaacatctgcgttggcttatggtacgcagttaaatttaaaggc
tccgaaacgatgtctattactcgccgggacgatatcatcgatacccctgacaccattgtg
cttgcttttgatatcgaaaccacaaaattaccgttaaaattccccgatccagcaaccgat
caaattttcatgatttcgtacatgattgacgggcagggttacttgataactaaccgagaa
atcgttgcagctgacgttgaagattttgaatatacacccaagcctgaatttgagggacca
ttcatcgttttcaacgaaccaaacgaaatttctcttattcagcgattcttggatcacatt
ctagaagtaaagccccatgttattgtaacgtacaacggtgacttcttcgattggtcattc
atggaagcgcgtgcaactttccatgagatgaacatggccaaaatgattggttgggaacgt
gacaaagaaggcgtttacagttgccgtccctcaattcatatggattgcttcaactgggtc
aaacgtgattcctacttgcccgtgggttcacaaaatctaaaagctgttgcaaaagccaag
ttgcgctatgaccctgtggaacttgatccagaagaaatgtgccgaatggctgcggaacaa
cctcaagttatggctaactattcagtttctgatgctgtagcaacctactatctgtacatg
aagtacgtccatcctttcatctttgcgttgtgtactattattccgatggaaccggatgaa
gtgttacggaaaggttctggcactttgtgcgaatcactcttgatggtacaagccttccgt
gccaacattattttccccaataagcaagtgtctatgcttcaaaactggacggatgatggc
catcttctcgatacagagacatatgtcggcggtcatgtcgaggctctagaatcgggtgtt
ttccgctccaatattccgtgtagattccgcttaatccctcaagtctttgacatgctcctt
gaaggtatcgagcggacaattaggcatgcagtagaagaggaagaacatgttcctattgag
caagttactaacctggacgaagttatagatgatatcaaggaaaaacttatcagtctacga
gatgcgcctaaccgaatagaattaccggttatttatcacttggatgttggcgctatgtat
ccaaacattattttgaccaatcgcctccaaccttcagccatggttgacgaaagcgtttgt
gcatcatgcgatttcaatcagccgggcgcacagtgccaacgtagcatgtcgtggatgtgg
cggggtgatttcatgccagccacacgtggtgagtttcaacgaatccagcagcagttggag
aacgaaaaatttccaccgatcattcccgggatgcccaccagagcttttcaccaacttact
cgtgaagagcaatctactaaagaaaaacagcgtctttccgaatactgccgcaaagcctac
aagaaagttcgtgtaacccgcacagaagagcgacagcagacagtgtgtcaaaaggaaaac
agcttttacgtcgataccgttcgagctttccgtgatcgacgatatgagtataaaaatctg
aataagatggcgaagaagcaaattgctgaagcgattgcacttggtgatgcgggggagatt
aaatcggcaaaaaaccgtgaagtgctttatgactctctacagcttgctcacaaatgtatt
ctcaattccttctacggctacgtcatgcgaaaaggagcgcgttggcatagcatggaaatg
gctggtattgtatgtcacactggtgctgggatcatccgaaaagctcgagaactaatagaa
cagattggccgccctctggaacttgacaccgatggtatttggtgtattttaccatcatct
tttccggaaaactacgtgatcaaaacctcaaatcccaagaagtcaaagataaccatatcc
tatccaggtgccattttgaatgtgatggtgaaggatgccttcacaaacaatcagtatcat
gaattggtagatcctgaaaatttgagctacatccaacgggatgaaaactcaatttttttc
gaagttgatggtccgtatctagcaatgatactacctgcctcaaaagaggaagggaaaaaa
ttaaaaaaacgttatgccgtttttaactttgatggtagtcttgccgaattgaaaggattt
gaagtgaaaaggcgtggagagcttcagcttattaagatttttcagtcgtctgtatttgaa
gcttttctcaaaggtgacacactggaaacctgttaccaggccgtggctaaaattgcagac
tactggcttgatgtgttatattcaaaagctgagaacctccccgattcggagctttttgaa
ttgattacggaaaatcgttcgatgtcacgtaaattggaagaatatggcggtcagaaatcc
acatccattagcacagccaagcgcttggcagaatttttgggtgatcaaatggtaaaggat
gccggtttaagttgtcgtttcatcatttcaaagaaaccagaaggagctcccgttacggac
agagccgtgccgttggcaattttccaatctgaacttagtgtcaaacgtcattatttgaaa
aagtggcttaaagacaattctttaacggattttgacatccgcaccattctggattgggat
tattacattgaacgtcttggcggatgcattcagaaaatcattaccattcctgccgcttta
caaggggtggctaaccctgttcccagggtccaacacccagattggcttcacaaacgaatg
ctggaaaaaaatgatgtcctgaagcaaaggcggattaatgaaatttttaagaccaccgcg
aagccaatttatgatcctagttcagaagattcagcagtagtaggagacatggaagatatt
ggtggaggcaacggtattggaaacaatcgaccgatagtgacctccaaaagaaaacgaaat
atcagcgaatccgctaacgaattggataagaactggcgtgaaatccttggtcctccacca
ccgatgggcaaagctggaggagaagagcgtgaaatgtggattcgctatcacaaaaagaag
tgggccattcaaataaaacagagagtggctcgtcgcggaaaagaagcaaatagcaataca
ggagtatcttccacgtctaaccttgggggaattcttgcgctggagtcttacaccaatttg
ggaggcttcttgcgacgtgcgcagcaaacacttttgtcttccatgtggcaaattttacaa
gtgatggaaacttcacaaccaggcatgttccggttgtgggctttggttggcaacgagctt
caccaaattcgattaaccgtgcctcgcatattttacctaaataagaaaaaacccttggaa
aaagaagttactagtgaatcagccatctggcgaaaggtaaatcggatactccctcggtcc
catcgcgtttataatctgtacgaatacagcgtacccgaagaagtctaccaacagaacttt
aaccagttaatggctgacttgtctacttcagacaatgctggaatttacgaaacccaggta
ccgcttgattttcgcgtgttagtgcagcttgggtgtgtttgtgccgtcgacaggagtcag
cgttttattccaactggtgataccgaaagtttcaatttatcacagttgacattcaaaacg
ctggctcatcacccctacctggaatcagggatagagtcactaaaatatctgtacatttat
cattataaaagcggaaataaagttatgttggtgctcttctccccaccagccaaaaaggcc
aattttttcgtcgttgatacagttcggaccaaccaaatgccaaatttggcaaatctttac
aacgaggaacgacttaaaagactatcacaggctgatattaatgaaagttcagtacctgct
agagattattcgttttctattcaagtggaaaccgatattcgccaagtctatcgtcaaatg
aaccgtttgttgcaagcatacaaagaagaaaaacgagggccaacttttgtggccatccaa
tcccatcaggacttgcctacgactgcctcgcaaatccaaactctcaatgagttcccgctt
gttcccatccacagcactgatcctgatggcttgtataatgtgctcgactggcagagagta
ggctcaaaagcttgcttgcgtcattttcttcgcctacgctccgtcctcgatgccaatctg
gagcaatgccgttattttcatattccgattggaaatttgccctctgacgccaaccttttt
ggggctgatttgtttttcgcccgccatctgatccgcaacaattgtgtcctttggtgctca
ccgactgcacgtcccgatctcggcggcaaagaggcagatgacaaccgactcgttacagaa
attgaggataatacgacaacgctggtagtcaacaacgccggcgtctacagcaatgtttgt
attgagatggacgtcgatgcgttggcagtcacaaccttactacagtcacatcatgttttg
gatattgaaggcacaagctcaagcaccgcctttgacgtgccgcaaacatcacttaaggac
atgctcaacgacactagcggcccagaacttagcaattatagcgagtcagccatgtgcgtg
acagtctttcgagttctaaaatcagtggtagcttcctggcttcgggatatatcagttcat
cgtaatgtatttgctgatttccaagttattcatttctacagatggttgcgcagcccaaca
gctttactttatgatccagcattgcgccgtatgctccaaaatctaatgcgcaagtacttc
gttcagctcctagccgaatttcagagactcggagccacggtcgtatatgctgattttggc
cgtattgttcttggcactaaaaagcggcgcatacctgatgcgttatcatatgttagcttc
gtgtgcgctagtttgcaccagaaggaactcttccgcagcttagaactcaatgttcaacat
tgttggcaattgcttgtatggcttgatcctgccaactatggtggggttaaaggaaagaca
gattctgcaaaggagagtgaagaaggtaccgaagacactagttttactgaagatgaggaa
gaagaaggaacggccgtagaaatgaactgggacgtagtcaaatattttccagaagatccc
ccttgccaagaatatttcaacaccgtaattgccacatacatttcagctatccatgatcac
ttggcagaatcttatggcgatcgcatgcccggcgccacgccaatacggcgcatccaatct
tcacagacacaacgcagtaaagtcggtccaactccggattccctaaaagaatttacgcgt
gaactcatcgaccaagaaatcgctcagcatcttttccgtgttgttcaaaagcttcacaaa
cagctgcatgggcaccatggtacggatggactgagtaacccttcccttgaattcgttaaa
gccgtgtgccgcgtttttcagctggataccaatatcgtagaagaggtcactcggttacga
agaaatctcctcaagctaatcggtgtaggggaatttagtcaagatgctgaatggaaagac
tcgtgcatgtcatacatcctccccgaagttatttgtcctacttgcaatcattgtcgagat
atcgatttgtgcagagatccacatgaatcagaagatcgcggaatacctacatggcaatgc
ccgctttgtaaatccagttatgacagtgatgaaattgaatccatgctattggatgtagtc
aaccggaaaaccatgagcttcgtattgcaggatttgcagtgcaaaaaatgcaaacagatc
aaacgggagaacttgtctcagttttgctcttgtgcgggtgagtttcagctattgcaatct
tcctcgaccttgttgcagacgttggcgatttttgagcgagttagcaaaaaatttagcctc
acacttcttcatgaaaccgtagatcaactgttgaaaatgaatcaaaaggcaaataagtaa

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