KEGG   Daphnia magna (water flea): 116922066
Entry
116922066         CDS       T07514                                 
Name
(RefSeq) exosome complex component CSL4 isoform X2
  KO
K07573  exosome complex component CSL4
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116922066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmk03019]
    116922066
Messenger RNA biogenesis [BR:dmk03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     116922066
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     116922066
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1
Other DBs
NCBI-GeneID: 116922066
NCBI-ProteinID: XP_032784373
LinkDB
Position
LG4:complement(10171747..10172963)
AA seq 239 aa
MSRLQTNLAVMLRNHSCQKNQLWQTRVMTSNENSTHTENKCIISTPGQRLCLAEDKYIGG
VGTYTRQGYIMSCLAGVVKITAQPDKRILVEVRSGKEQTVVPSAGDIVTARITQVNPRWA
RCAILCVKEMVLAEPFRGQLRKEDVRATEKDRVEMYKCFRPNDIILARVLSLGDAHSYVL
STAENELGVVIAYSEEGTPMVPVGWQEMQCPKTYVKEMRKVAKVSPEIISNENIKEATN
NT seq 720 nt   +upstreamnt  +downstreamnt
atgtcgcgtctgcagacgaatttggctgtaatgctacgaaatcattcctgccaaaagaat
caactgtggcaaacacgtgtcatgacttcaaatgagaattcaacacacactgagaacaaa
tgcataatttctactccaggacagagactatgtcttgcggaagataaatacattggaggt
gtggggacatacacaagacaaggctatataatgtcttgtttggcaggtgttgttaaaata
actgcacagcctgataagagaatccttgtagaagttagaagtggtaaagaacaaacagtt
gttccatcagctggtgacattgttacagccagaataacacaagtaaatccgcgctgggcc
agatgtgccattttatgtgtaaaggaaatggtgttggcagaaccattcagaggacaactc
cggaaagaagatgtccgcgctacggaaaaggatagagttgaaatgtacaaatgttttcga
cctaacgacataatcttagcaagagtgttgtcattaggtgatgcccattcctatgtgttg
tcaactgcagaaaatgaattaggtgtggttattgcatacagtgaagaagggacacctatg
gttccagttggatggcaagaaatgcagtgtccaaaaacctatgtgaaggaaatgcgtaaa
gttgccaaagtttcacctgaaatcatttcaaacgaaaatattaaagaagcaacaaattga

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