Daphnia magna (water flea): 116922066
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Entry
116922066 CDS
T07514
Name
(RefSeq) exosome complex component CSL4 isoform X2
KO
K07573
exosome complex component CSL4
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116922066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116922066
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116922066
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
116922066
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
116922066
NCBI-ProteinID:
XP_032784373
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All DBs
Position
LG4:complement(10171747..10172963)
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AA seq
239 aa
AA seq
DB search
MSRLQTNLAVMLRNHSCQKNQLWQTRVMTSNENSTHTENKCIISTPGQRLCLAEDKYIGG
VGTYTRQGYIMSCLAGVVKITAQPDKRILVEVRSGKEQTVVPSAGDIVTARITQVNPRWA
RCAILCVKEMVLAEPFRGQLRKEDVRATEKDRVEMYKCFRPNDIILARVLSLGDAHSYVL
STAENELGVVIAYSEEGTPMVPVGWQEMQCPKTYVKEMRKVAKVSPEIISNENIKEATN
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtctgcagacgaatttggctgtaatgctacgaaatcattcctgccaaaagaat
caactgtggcaaacacgtgtcatgacttcaaatgagaattcaacacacactgagaacaaa
tgcataatttctactccaggacagagactatgtcttgcggaagataaatacattggaggt
gtggggacatacacaagacaaggctatataatgtcttgtttggcaggtgttgttaaaata
actgcacagcctgataagagaatccttgtagaagttagaagtggtaaagaacaaacagtt
gttccatcagctggtgacattgttacagccagaataacacaagtaaatccgcgctgggcc
agatgtgccattttatgtgtaaaggaaatggtgttggcagaaccattcagaggacaactc
cggaaagaagatgtccgcgctacggaaaaggatagagttgaaatgtacaaatgttttcga
cctaacgacataatcttagcaagagtgttgtcattaggtgatgcccattcctatgtgttg
tcaactgcagaaaatgaattaggtgtggttattgcatacagtgaagaagggacacctatg
gttccagttggatggcaagaaatgcagtgtccaaaaacctatgtgaaggaaatgcgtaaa
gttgccaaagtttcacctgaaatcatttcaaacgaaaatattaaagaagcaacaaattga
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