Daphnia magna (water flea): 116922265
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Entry
116922265 CDS
T07514
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116922265
03036 Chromosome and associated proteins [BR:
dmk03036
]
116922265
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116922265
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
116922265
SLIK complex
116922265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
HTH_CHD1_Hrp3
Helicase_C
CHD1-like_C
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116922265
NCBI-ProteinID:
XP_032784533
LinkDB
All DBs
Position
LG5:complement(7195537..7203938)
Genome browser
AA seq
1774 aa
AA seq
DB search
MPKLSDDSNEDSPSENSGSESSASSNSSGSDSGSSSSASESEADSSPPKSKKHPSPSSGK
VQPRRATSIANNTKGYHLSDSSSSNDEDEETASPTQHRPVQAGQRVAHKPNAIVAASRRQ
IAPLSRTAARKPQRSKYTQSSGDESSNSDDDSRSRPSTRRQGASVSYKENSAEETGSEDL
VEVEWGQEAVAAAVESENAETIERIIDTRMGRKGATGPPTTVYTIEENGDPNANFCPIRE
PDKAEQQFLIKWLGWSHIHNTWESEQTLRDQKSYAFQVKGLKKLENYLKRDDEIRVWKAR
ASPEDVEYYECQQELQQELLSSYMAVERIIAENRKAESEHPDYFIKWESLPYSDATWEDG
ALIVKKYQTKIREFREREDSKRTPSKLCRALKFRPKFTPLKEQPDFIGGDAACILRDYQL
NGLNWMVHAWCKENSVILADEMGLGKTIQTISFLNYLFHAQQLYGPFLVVVPLSTMAAWQ
KEFAQWAPNINVVTYIGDMTSRDLLRQYEWCHPGNKRLKFNALLTTYEILLKDKSFLGAV
SWACLMVDEAHRLKNEDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFP
TWELFEEEHGNAEQKGYSRLHKQLEPYILRRVKKDVEKSLPAKVEQILRVDMSSLQKQYY
KWILTKNYTALRKGNKGSASTFVNIVMELKKCCNHAFLTKPQENERRYGASATEQLQQLI
RGSGKLVLLDKLLVRLRETGHRVLIFSQMVRMLDLIAEYLQLRHFPFQRLDGGIKGELRR
KAMEHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK
NQVNIYRLVTKASVEEDIVERAKRKMVLDHLVIQRMDTTGRTVLDRKTNNPSNSTPFNKE
ELNAILKFGAEELFKDDEDGEDEPACDIDEILRRAETRDEPAPQMGDELLSAFKVASFTI
DEEEPVSMNPTRHKPTDNDDENRAWDEIIPENVRKKIDQEQREKEMADLYLPPRRGRGQQ
QGADGKSALEEGRSRRNQQEEESEASEEGSDGEDRPRKRGRPRVNGRESVKGFSDAEIRR
FLKSFRKFASPLDRLEAVAGDAELQEKPLSDLKKLGELILARCQEALESQKSGKDTPAEV
ADDGMTPGGRKKRERGPSLKISNVSVNAKTIMTSLQELEPLSKLLPANVEERKRWYLPTK
LRDPHWDIDWANDDDSRLLCAIYEYGMGSWEAMKMDPNSGLSEKILPDGQDAKPQAKHLQ
NRADYLLKVMAKLYDAQQLGKPTKPKRQRKAKPVSKSLIGETEDISSGDDFTLNSPSPSN
STRRPSASKAPKGGKVKTEDEDSHVEARTEDERLVPPCRLITDVKEGRKKDSVAKKDKKV
KKKDAGPMHFTANSVPRAVEIIGELDPSIFNECKEKMRPVKKSLKALDNPPQSMSDVEQV
QHTQQCLLHIGEHIDKCLAAIQDPERNRVWRNNLWYFVSKFTEFDAKKLFKLYRNATKKQ
EKGNEEGEKTTKTRDKEGRTKDKNKDKSRVKEENRTSSYNIPNKRRHEAEEAQPHLPNKR
PYNGATIVDSWTDKTNDHERERGRGPTLSPTDRREQFASDSERERDRRDRDRERGRDRER
DRPPVVGAYSRPPPPPLLGATNYNPHADSRDRDRERDRWMGVPREERYTTDRRDGYSRSH
VSGVGASAFARSDRDPRDHRERDYRPPAVDKRGYPNGPAAGSYSGSHYNDFDPPPNYPRG
VPSSGYADWRGSKDREYRREFSDRRPTLPPPNGS
NT seq
5325 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagctatcggatgactcaaacgaagattcgccgtcggaaaactctgggtcagag
tcctcagcatcctccaacagcagtggatcagattcgggttcttctagctctgccagcgag
tcggaagccgattcttcgccacccaagagcaaaaaacatccatcgccatcatctggaaaa
gttcagcctcgacgggctacttctatagccaacaacacaaaaggctatcatttgagcgac
agtagttcttccaatgacgaagacgaggaaacggcttctcctacgcaacatcgacctgtc
caggctggccagcgtgtggcccataaacctaacgcaatcgtggctgctagccgccgacaa
atagctcctttgtcacgtacagcagcgcggaaaccccaacgttcgaaatatacacaatcg
tcaggagatgaatcgagcaacagcgacgacgattcacgaagtagaccgtccactcgacgc
caaggagcttctgtcagctataaagaaaattctgcggaggaaacaggttcggaagatctg
gtggaagtggaatggggtcaagaagctgtcgcagctgctgtcgagtccgaaaatgcggag
actattgaacgcattatcgatacacgaatgggtcgtaaaggagcaactgggccaccaact
actgtctacacaatagaagagaatggcgatccgaacgccaatttttgcccaattcgcgaa
ccagacaaggcagagcagcaatttctcattaaatggcttgggtggtcccatattcacaat
acgtgggagtcagagcaaaccctgcgtgaccaaaagtcgtacgcatttcaggttaaagga
ttgaaaaaattggagaactacttgaaacgtgacgatgaaattcgcgtgtggaaagcccga
gcttcaccagaagatgtagagtactatgaatgccagcaagaacttcaacaggagttacta
tcgagctacatggcggtagaaagaattattgctgaaaatcgtaaggctgaaagcgagcat
ccagattattttattaaatgggagagcttaccgtattccgatgctacttgggaagacggt
gctcttattgtgaagaagtatcaaaccaaaatacgagaatttcgcgaacgagaggattct
aaacgaactcccagcaaactttgtcgtgccctaaaatttcgccccaaatttacaccgctc
aaagaacagccagatttcattggtggtgatgctgcctgcattctgcgagactaccagtta
aacgggcttaactggatggtacatgcctggtgcaaggagaactctgtgattttggctgat
gaaatgggtctaggcaaaacgatccaaactatcagctttttaaactacctctttcatgcc
cagcaactctatgggccctttctggttgttgtgcctttgtctaccatggccgcctggcaa
aaagagtttgctcagtgggcacccaacatcaacgttgtcacctatatcggagatatgaca
tcaagagacttgctgaggcagtatgaatggtgtcatcctggaaacaagcgacttaagttc
aacgcgctgttgactacctatgaaatccttctaaaagataaatcttttttgggtgctgtc
agttgggcatgccttatggtagatgaggctcatcgactgaaaaacgaggactctcttctt
tacaaatcgctcaaagaattcgataccaaccatcgactccttattactggcactccgcta
caaaacagcctcaaagaattatgggccttgcttcatttcattatgcctgataagttcccc
acctgggaattgttcgaagaagagcatggtaacgccgagcaaaaaggatattcccgatta
cataaacagcttgagccatatattcttcgtcgagtgaaaaaagacgtagaaaaatctctt
ccagctaaagtcgaacaaattctccgcgtagacatgtcttcgcttcagaagcaatattac
aaatggatattaacgaaaaactatacagcattacgaaaaggaaacaaaggttcggccagt
acatttgtcaatatcgtcatggaattgaaaaagtgttgcaatcacgcctttctgacaaag
ccccaagaaaatgaacgacgctatggagccagtgctactgaacaattgcagcaattgatc
cgtggttcgggaaaactggtgctcctagacaaactattggtccgtctaagagagacaggc
caccgcgtgctaatcttttcacagatggtgcggatgctggacttgatagcagaatatctg
caactacgccatttccctttccagcgactagatggtggtataaagggtgaattaagacgc
aaggcaatggagcacttcaatgctgaaggatcgcaagatttctgtttcttgttgtcaact
cgcgccggaggtctcggcattaatttggccaccgctgacaccgtcatcatcttcgattcg
gattggaatcctcagaacgatttgcaggctcaagcacgagctcaccgtatcggccaaaag
aaccaagtcaatatctatcgacttgtgactaaagcgtcagttgaagaagacatcgtagag
agggccaagcgaaaaatggtactcgatcacttggtgatccagcggatggacaccaccggt
cgcacggtccttgaccgtaagactaacaatccgtcaaactcgacaccttttaacaaagag
gagctgaatgccattctcaagtttggcgctgaagaactgtttaaagatgacgaagatggt
gaagacgaacctgcctgtgatattgacgaaattcttcggcgagctgaaacgcgtgatgaa
ccagcaccgcaaatgggtgacgagcttctttcggctttcaaagttgccagtttcacgatt
gacgaggaagagccggtttccatgaacccaacgcgacataaaccaacagacaatgacgac
gaaaaccgggcttgggacgaaattatcccagagaatgttcggaagaaaatcgatcaagag
caacgtgaaaaagaaatggccgacttgtacttaccacctcgtcgaggtcgtggacaacaa
caaggagctgatggaaaaagtgcgctggaagaaggtagatctcgcaggaaccagcaggag
gaagagtcagaagccagtgaagaaggatcagatggagaggacaggcctcgaaagcgaggt
cgacccagagtcaacggccgcgagagtgttaaaggctttagcgatgccgagattcgtcgc
ttcctgaagagtttccgcaaattcgcctcaccactcgatagacttgaagctgttgcgggt
gatgctgaattgcaggagaagccacttagtgacctcaaaaagcttggtgagctcattctt
gcacggtgtcaggaggcccttgagtcacagaaatcgggcaaggacacgccagcagaagta
gcggatgatggcatgacgcctggtggcaggaaaaagcgtgaacggggtccgtctctgaag
atatcgaacgtgtcggtcaacgccaaaacaataatgacatctcttcaggagctggaaccg
ctttctaaattattacctgccaatgtagaagagaggaaacgctggtatttaccaaccaaa
ctcagggacccacattgggatatcgattgggctaatgacgacgattctcgtctactgtgt
gctatttatgaatatggtatgggatcttgggaagcaatgaaaatggatccgaattccggg
ttatcagaaaaaattcttccggatggacaggatgcaaaaccacaagcaaaacacttacaa
aaccgcgccgattatcttctcaaagtgatggcgaaactctacgatgcccagcaattgggt
aaaccaaccaaaccgaagcggcaacgtaaagccaagcccgtctcaaagtcattgatcggc
gaaacggaggatatcagttcgggtgatgacttcactctcaacagcccatcgccgagtaac
tcgacccgacgtccttccgcatcaaaagcacctaaaggaggaaaagtcaaaaccgaggac
gaggattcacacgttgaagctcgcacagaagatgaacgtcttgtgcccccttgccgtctg
attactgatgtgaaagaaggtcgcaagaaggattctgttgccaaaaaagacaaaaaggtt
aagaaaaaagatgctggaccgatgcatttcacagctaatagcgtccctcgggctgttgaa
attatcggtgaattagatccttcgattttcaatgagtgcaaggaaaagatgcgaccggtg
aaaaaatcattgaaggcattggacaacccccctcaaagtatgtcggatgtagagcaggtt
caacatactcaacagtgccttctgcacattggtgaacacatcgacaagtgcctggcggcc
atccaggatcccgagcgtaaccgggtttggcgcaacaacctttggtacttcgtatccaag
tttactgaatttgacgccaaaaaattattcaagctttaccgtaatgccaccaagaagcaa
gagaaagggaatgaagagggcgagaagaccaccaagactagagataaggagggccgaaca
aaagataaaaataaggataagtctagagtgaaagaagagaatcgtacctcgagttacaac
attccaaacaaacgacgccacgaagcagaagaggcgcagccacatttgccaaataaaaga
ccttataatggtgcgaccattgtcgatagctggaccgacaaaaccaatgaccacgagcgt
gaacgtggtagagggccaactctttctccgacagatagaagagaacaatttgcttccgat
agtgagcgtgaacgagataggcgggaccgtgatagagagcgaggacgagaccgtgaaaga
gatcgacctcctgttgttggcgcctacagtcgtccacctccgccccctctacttggggcg
acaaattacaacccacatgctgatagtagagatcgtgatagggaacgggaccgttggatg
ggagtacctcgtgaagagcgatacactaccgataggcgggatggatacagtcgttcacat
gtctccggcgtaggagcttcagcatttgctcgatcggatcgcgatccaagggatcaccga
gaaagggattaccgaccaccagccgtagataaaagaggttacccaaatgggccggctgct
ggctcttacagcggttcccattataacgattttgatccgcctcctaactacccccgtggg
gtgccaagtagtggctatgctgattggcgcggtagtaaagatcgagaatatcgtcgagaa
ttttccgatcgtcgtcccactttgccaccgccaaacggatcttga
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