Daphnia magna (water flea): 116922762
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Entry
116922762 CDS
T07514
Name
(RefSeq) uncharacterized protein LOC116922762 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116922762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116922762
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116922762
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116922762
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
116922762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
HEAT_MROH2B_C
Motif
Other DBs
NCBI-GeneID:
116922762
NCBI-ProteinID:
XP_032785053
LinkDB
All DBs
Position
LG5:7854328..7861821
Genome browser
AA seq
1605 aa
AA seq
DB search
MAGESQNNPQQDVIAEEYMSSLADLTVNSKPLINMLTMLAEENVESAPTIVKVIEKHLSQ
VKPEMKLPVLYLVDSIVKNFGGAYTSLFTQNIVSSFCSVFEKVEESTRASMFKLRQTWSD
VFPPKKLYALDVRVKSIDPAWPVTAPLPTSIHLNPAFLPKEERVGYKPNSTRKSSSSNVT
KPTKPAAKIAQPAAVPTVPASDLCETEMRESLLKKQKELLELQQKKLEIELLQTKARLQQ
QQIQLISTVQKTPLDVVNGLPIPEETPAFFAASPLDETNLPVPPPSDAFSVPEPMELALT
PPDVSIEELIVQQQPVAITESVEPHHRSSRSPEKRTEAKKDKKDRDRDRDKEPGRKKSRK
DSGQEDARSKSKDSSRARKGKEQQHPESVIVLESEPVKGMSGEDEVVVVGGRVAPQLRNH
PNLRDAAKAMPRIPKISQRHPSAAGGQSAPQSRDPRLMMLKPNQAERRKMEVMKKESVVE
PKKRRTNRFDDLFGNEDIDLRKVPAVPVIPAVPGVVIPPPLASRDSPPRGPWPPSKRGHA
APRGRAAWPTRGGRGGRSGPREEEDREPDGSGSPRNMDFILEQAKENHRNGVINDGEYGT
IIRQVFQMSETKMIREVQRRESFSVPPGPHGPHPSMEHDFRFPGRDLPPGPPYGLEPYGP
EPFGPEPFGPEQDRGWNDPRRGGGFPPGGPFPPGPGRMQRFDMIQPGRGHHGPGGMGPIN
SAFEVRPDEDMKTIPIDNIPREIRFYGDKAIILMAADDPRLLGFQTCVRRVLLDNMPVDC
TVGNDYVDFHFDGQLHKIKIGAPTRELYIDGTWYECMFGGPPITVNLSGRPVQAILEGPP
PTVKIGTERRLDLLAGRVTMIIDAHSVIPVYLDLKLQHFEMDGKVFTLQFKDALRTAVVD
GNPYSVDFGGLPMGIYLDGRKHFVRFSSLPRGVEPGRVLQPLTQSEENRRVLDEEKTASQ
TPPLSTVNIGELLSKLVATGLLPGSTPEVAKPAPVKPEIKQEEMKMRVVDLSDSESMKVR
PNVAISMLYSGMQCGSCGLRFPADQTVRYSTHLDWHFRQNRREKGASKRPQSRKWYCSVS
DWIQFEETEGSEEKRLNWFEAQAKEKSEKDGERIGDESTSREESTSVAVGSAPEENKCFV
CHEELDQFFHEESEEWHLKDAVRVEGITFHRLCYRDHLTNMETGAYSPSDALDEYQSGNE
ESKTSSEDEKQASCDDEPFFELPDIKKDEIVKDLMDMQEVGLSDLNAEVPFLETEPLKIE
TVEEVITQDEIAQMTFKTEPVSNEIQVEVSDVLPVQPERAVETSLSSSIKTEALDVLESD
YLQNATSQEIGSTSYDPNQTDFTNILEEEINKMCTVSVLKDEANLLESLDEVKRSAVESF
DDVRESTVESLNVINESEKFHLNLAEVRENENLLDAMDEAPQNIQEPIEKMESTEVLEES
NSPATLTPQISGEVECRDSILSEETELILSEETKPILVEETKPILEPMVAVVQTSTVNSS
LDGNVEMTNKQPAPAPPAGIKIKINLFNKASTIASTVQQVVPPVPPPSETASVSSANIPE
NSSKPLIPTSDESTVTNKPRLAGRKLTVLPPMTKGVETSGLCSIM
NT seq
4818 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgaatcacaaaacaatcctcaacaagatgtcatcgctgaagaatatatgtcg
tccctggctgatttgacggtgaatagtaaacccctcatcaatatgttgaccatgctggct
gaggaaaatgtcgagtctgcaccgacaatcgtcaaagttattgaaaaacatctatcacag
gtgaaaccggaaatgaagttgcctgttctctacttggtggattcaatagtgaagaatttt
ggcggcgcttacacatcgctcttcacgcagaacatcgtgtcttctttttgcagtgtcttt
gaaaaggtggaagaatcgacgcgtgcctcgatgtttaaactgcgccagacctggtcggat
gtttttccacctaaaaaactttacgccttggacgttcgggtaaaatccattgatcctgca
tggcccgtcactgcaccgttaccaacaagtattcatctaaatccagcattcctgccaaag
gaggaacgcgtgggatataaacccaattcaactagaaagtcgagttctagcaacgttacc
aaaccaactaagccggcggcaaaaatagcacaaccggctgccgtacctaccgtgcctgca
agcgacctttgcgaaacagaaatgcgcgaaagtcttctgaagaagcaaaaggaattgctt
gaacttcagcaaaagaaattagaaatcgaactgctgcaaaccaaagccagactccagcaa
caacagatacagctcatcagcacagttcagaagacaccactcgatgtggttaatggacta
ccaattcctgaagaaactccagcgtttttcgcagcgagtccgttggatgagactaatctg
ccagttccaccaccgtctgatgccttctccgttccagaaccgatggaattggccctgacg
cccccagatgtgagcatagaagagctaattgtccaacaacaacccgtagccatcaccgag
tcggtggaaccacaccaccgttccagtcgttccccagagaagaggacagaagcaaaaaaa
gataaaaaagatagggatagagaccgagataaggaacctggtcgcaagaaatcacgaaaa
gattctggtcaagaagatgctcgctccaaatccaaggactcttcacgcgcacgtaaaggc
aaggaacaacagcatcccgagagtgtgatcgtgttagagtcagagcctgtcaagggtatg
tctggtgaagacgaggtggtagttgttggtggacgagttgctccacagttgaggaatcat
cccaatttgagagatgctgcaaaagctatgcctcgcattcctaagatcagtcaacgccac
ccgtccgcagcaggcggccagtcagcccctcaaagccgtgacccacgattgatgatgctc
aaaccaaatcaggctgaaagacgtaaaatggaagtcatgaagaaagaaagcgtggtcgag
ccaaagaaaagacgaacaaaccgttttgacgatttgtttggcaacgaagacatcgattta
agaaaagtgcctgctgttccagttatccctgcagttccaggagtggtcattccacctcca
ttagctagccgagatagtccgccgcgaggaccatggccgccttcaaagcgaggacatgct
gcccctcgtggtcgagcagcttggcctacccgaggaggacgtggtggacgtagtggacct
cgggaagaagaagatagagagccagatggtagtggttcaccccgcaacatggactttatt
ctggaacaagccaaagaaaatcatcgcaacggtgtaatcaacgatggcgaatatggcacc
attattcgccaagtattccaaatgtcggaaacgaagatgattcgtgaagttcaacgtcgc
gagtcgttttccgtccctccaggtccacatggtccacatcccagcatggagcatgatttt
cgttttcctggtcgagaccttccacctggaccaccctacggtcttgagccctatggccct
gaaccctttggccctgagcctttcggtcctgaacaagacagaggatggaatgatccccgt
cgaggcggtggcttcccgcctggtggaccatttcctccgggcccaggccgtatgcagcgt
tttgatatgatccagccgggtcgtggtcaccacggtccaggtggtatgggtcccattaac
tccgcttttgaggttagaccagatgaagatatgaaaaccatccctatcgataacatacct
cgggaaattcgcttttatggagacaaagcaatcattcttatggctgccgatgacccccgt
ttacttggttttcagacttgcgtacgacgcgtcctgcttgacaatatgcctgtagattgt
acggttggtaatgactacgtggatttccacttcgacggacagctccataagattaaaatc
ggcgccccaaccagagaactatacatagatggaacctggtatgagtgcatgtttggtggg
cctcctattacagttaatctgagcggccgaccagtacaggcaattctggaaggtccacct
cccacagtaaaaattggcaccgaacgtcgattggatcttttggctgggcgtgtaacgatg
atcatagatgcccatagtgtcatccccgtttacctagatctcaaactgcagcactttgaa
atggatggcaaagtctttactttgcaattcaaagatgcactgcgtactgcggtggttgac
ggtaatccttacagcgttgacttcggtggtttgcctatgggcatctatcttgacggtcgc
aagcattttgttcgcttctcctctctcccgcggggtgtcgagcccggccgtgttctacag
cctcttactcaaagtgaagaaaaccgccgggttctggatgaagagaaaaccgctagtcaa
actcctccgctgagtacggtcaatattggtgaactcttgtccaagttggtggctaccggc
ttgttacccgggagtacaccggaagttgcaaaaccagctcctgttaagccagaaataaaa
caggaagagatgaaaatgcgagtcgtcgatttaagtgattccgagagcatgaaagtccgt
ccaaatgtcgcgatttcaatgctttatagtggcatgcaatgtggtagttgcggattacga
tttcctgccgatcagacggtgcgttacagtactcatcttgattggcatttccgacaaaac
agacgagaaaaaggcgcatcgaaacggcctcaaagtcgtaaatggtattgcagtgtttcc
gactggatccagtttgaagaaacagagggttcagaggaaaagcgactgaattggttcgaa
gctcaagcgaaagaaaagtcagagaaagatggagagcgaattggagatgaatcaacctcc
agggaagagagtacttcagttgcagttggcagtgcccctgaagagaacaagtgcttcgtg
tgccatgaagaactagaccagtttttccacgaagaaagtgaagagtggcacttgaaagat
gctgtgcgtgttgaaggaataacctttcatcgtttgtgctatcgggaccatctcaccaac
atggaaaccggagcgtattctccctccgatgctctggatgaatatcaatcgggcaacgaa
gaaagcaaaacttcttctgaggatgaaaaacaggcatcatgcgatgatgaacctttcttc
gaattgccggacatcaaaaaagatgaaattgttaaagatcttatggatatgcaagaagtc
ggtctgtcagatttaaacgccgaagttcctttccttgaaacagaaccgctcaaaattgaa
acagtcgaagaggtgattacacaagatgaaattgcccagatgactttcaaaacagaacct
gtaagcaatgagatacaggtcgaagttagtgatgtattacccgttcagcctgaacgagct
gttgaaacgagtttgtcgagtagtataaaaaccgaggcgctagatgttctagaaagtgat
tatttacagaatgcaaccagtcaagaaataggttccaccagttatgatcctaatcagacg
gatttcacaaacatacttgaagaagaaatcaacaaaatgtgtaccgtcagtgtgttaaaa
gacgaagcaaacctgcttgaaagcttggacgaagttaaaagaagtgcagtagaaagtttt
gatgacgttagggaaagcacagttgaaagtttgaatgtgatcaacgagagcgaaaagttt
catcttaacttggctgaagtgcgcgagaacgaaaatctacttgatgccatggacgaagct
cctcaaaatattcaggagccgatagaaaaaatggaatctacagaagttttagaggaatca
aattctccagccacgcttactcctcaaatttccggagaagtcgaatgtcgagactcaatt
ttgagcgaagaaaccgaactgattttgagcgaagaaaccaaaccgattctggtcgaagaa
accaaaccgattcttgaacctatggttgcggtagttcagacttccacagtgaactcttcg
cttgatggcaatgttgaaatgaccaacaaacaacctgctccagctcctcctgctggaatt
aaaattaaaattaaccttttcaacaaagcgtcaactattgcatctacagtacaacaggtt
gtgcccccagtacccccaccatcagagacggcgtcagtttcttcggcgaatataccagag
aacagtagcaaacctttaattcctacttctgacgaaagtactgtgactaacaagccaagg
ttggctggccgaaaattaactgttctccctcctatgactaaaggtgtcgagacctccgga
ctttgttccattatgtaa
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integrated database retrieval system
