Daphnia magna (water flea): 116923330
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Entry
116923330 CDS
T07514
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116923330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116923330
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
116923330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
MMR_HSR1
GTP_EFTU_D2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116923330
NCBI-ProteinID:
XP_045030187
LinkDB
All DBs
Position
LG5:complement(1825820..1830227)
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AA seq
691 aa
AA seq
DB search
MARHRNIRTMNYDEEYDGYDDVYGHSVEDDYASSPSMQHFLYDRSQEHQMSAYMQSDIPE
EDELVSDESKNGNDVGAPSRIPPLGELEQAQLYSCLDLLRDRMGDALSEQAGIDAILACN
FDAEKALDQLLKTSVASSLSKSTKIITKSKPAPAIQVEKIRGSEVRDGKTPVKVVSAKKV
VATGFSLPPTSTDASSSAYRQPAKQESAVEETSRQLGCLRTPGATPRSTSPADREAIATP
KSQARTRESRVDVASEYVKERSGTKALLNLVVVGHVDAGKSTLMGHMLFRLGQVSSKQMH
KYEQESKKLGKQSFMYAWVLDETGEERSRGITMDVAQSQFETESKSITLLDAPGHRDFIP
NMIFGAAQADVALLVVDATTGEFETGFESGGQTREHALLVRSLGVSQLGVVVNKLDMVGW
SRDRFNEIVARLGAFLKQAGYKEQDVFYVPVSGLTGENLTVLDEPKLTEWYSGPTLLQAI
DKFRPPERPLNRSARLVISDIFKSVGGSSGCCLAGRLESGMMQTGDKLLIMPLNEMIQIK
NIAINEVSKGSCFAGDQVVLTVSGADLSDVSLGSVLCDPSQPVKVTSRIQARIVIFNIDI
PITTGYPVVIHYQSLSEAATISKLIAQIHKSTGEVVRKRPRCLTKQTSGLVEIEISRPIC
MELYKDYRELGRFMIRANGTTIAAGLVTGIL
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctaggcataggaatattcgaactatgaattacgatgaagagtacgatgggtatgat
gacgtctatggccattctgttgaagatgattatgcatcctctcccagcatgcaacatttc
ctctatgacagaagtcaagaacatcagatgtctgcctacatgcagtcagacataccggaa
gaagatgagctggtttcagatgaatcaaaaaatggaaatgatgttggtgctccatctaga
ataccccccttaggtgaattagaacaagcccaattgtactcctgtcttgatcttcttcga
gacagaatgggggatgcactttcagaacaagctggcattgatgccattctagcatgtaac
tttgatgcagagaaggcccttgaccaactgttgaagacttctgttgcttcatcattaagt
aaatccacaaaaataatcaccaaatcaaaaccagcccctgcaattcaagtggaaaaaatc
agaggatcagaggttcgagatggaaagaccccagtgaaagtcgtgtctgcaaagaaagtt
gttgccaccgggttttccttgcccccgaccagtaccgatgccagcagttcagcctaccgc
cagccagcaaagcaagaatcggctgtagaagaaactagtcgacagctgggctgtctccga
actccaggtgctacaccacgttcgacatccccggcagatcgagaagctatagccaccccc
aaatctcaagctcgcacacgcgagagtcgcgtggacgttgccagtgagtacgtaaaggag
agaagtgggaccaaggcgttgctcaacttagtcgtcgtaggacatgtcgatgcaggaaaa
tcaacactgatgggccatatgctatttcgcttgggacaagtttcttccaagcaaatgcac
aaatacgaacaggagtctaagaaactaggtaaacaatccttcatgtacgcttgggtgctc
gatgaaactggcgaagaaagatcgcgtggtattacgatggatgtggcccagtcacaattc
gaaaccgaaagcaaatccataacgcttttagatgcgcccggccatcgcgatttcatacca
aatatgattttcggagcagctcaagccgatgtcgccctcttggttgttgatgccactacg
ggtgaatttgaaacgggttttgaaagtggaggtcagacgagggagcatgctcttcttgtt
aggtctcttggcgtcagtcagttgggagtggtcgtcaacaaattggatatggtcggttgg
tcacgcgatcgtttcaatgaaattgtagctcgtttgggtgcctttctgaagcaggctggc
tataaagagcaagatgtgttctatgtgccagtgtctggactaactggagaaaacttgaca
gttttggatgaacccaaactcactgaatggtacagtggaccaactttgcttcaagccatc
gacaagttccggccaccagagcggccattgaatcggtccgctcgactcgtgataagtgat
atttttaaaagtgttggtggcagctcgggttgttgtttagccggccgtcttgaaagtggc
atgatgcaaactggtgataaacttctaataatgcctctaaatgaaatgattcaaatcaag
aatattgccattaacgaggtttcaaagggatcgtgctttgccggcgatcaagttgttttg
actgtgagtggcgctgaccttagcgacgttagccttggatcagtgctgtgtgaccctagc
cagcccgttaaagttacgtcacgcattcaggcccgtattgtgatattcaatattgacata
ccaatcacgacgggttatccggtggttattcattatcaatctctgtccgaagcagctacg
attagcaaattgattgcacagattcacaagagcacgggtgaagtggttagaaagcggcct
cgatgtttaaccaaacagaccagcggtctggtggaaatcgagatttcccgacctatttgt
atggaactctataaggattatagagaattaggtcgattcatgatccgagcaaacggtacg
accattgctgcaggcctcgtcaccggtattctctga
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