Daphnia magna (water flea): 116923514
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Entry
116923514 CDS
T07514
Name
(RefSeq) transcription factor Sox-1a
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmk03000
]
116923514
Transcription factors [BR:
dmk03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116923514
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
SOXp
HMG_WDHD1
DUF7813
Motif
Other DBs
NCBI-GeneID:
116923514
NCBI-ProteinID:
XP_032785894
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Position
LG5:11358560..11362419
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AA seq
556 aa
AA seq
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MLTMESEMKGLGGHPGHLHQQHGLGSPSSAGQTSLSSHHLSVSSSHALSPPMTPQHLQQQ
QQQQQQQQQQQQQQQQQQQQYQQQYQMSTHGLHLGLSAQHAAAMAAAAAAAAAHHQHAAN
ALSSSGSSASSQSLHHQAGPGSGQGSTTSSAASAKNNNLDRVKRPMNAFMVWSRGQRRKM
AQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAVHMKEHPDYKYRPRRKTKTL
LKKDKYPGMGGGGPAAGGQGGLIQQQSSGGGGGQSGHHQDHQHGGGNHQRGGGHNMNNNS
VVLGSQQSGLQQSQQGGGGGLHSHHSSQREAAMYHHHHQHHMATNGYMPNGYSMMHDPNY
GQHYMAAAAAGLYGPRYDMNQAGGVPGGGSASPMSSYMNGAAANYGAMYAGTGGAGSPYS
MQSSQMGSSGGQAGIGSVGSTGSSHSPNSVKSETPTPQQQQQQQISIKREYVQQQQPTAG
GANAADLRHMISMYLPGDASSGIMDPTCGGRLQPIPGLQGHPGYHHSGSPDPMSAAAAAA
AAAAAAAAAGMTMAHM
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgttaaccatggaatcggaaatgaagggacttggaggtcatccgggtcatcttcatcag
caacacggactcggctcgccctcgtcggccggccagacttcgctctcgtcgcatcactta
tccgtctcgtccagtcacgctctatcgccacccatgacgcctcaacatcttcagcaacaa
caacaacaacagcagcagcagcaacagcaacaacaacagcagcagcagcagcaacaacag
tatcagcaacagtaccaaatgtccactcacgggctgcacttgggcctgtccgcccagcac
gcagcggccatggcggcagcggcagcggcagccgccgcgcaccaccagcacgcggccaac
gcgctcagctcgtcaggttcgtcggcttcatcgcaatcgttgcatcaccaagcgggccca
ggttcaggccaaggatcgaccacctcgtcggccgcttcggccaaaaacaacaacctggac
agggtcaagcgaccgatgaacgccttcatggtgtggtcacgcgggcagcggcgcaaaatg
gcgcaggaaaacccgaaaatgcacaactcggaaatcagcaaacggctgggagccgaatgg
aaactcctgtccgaagcggaaaaaaggccgttcatcgacgaagccaagcggctgagggcc
gtgcacatgaaagagcatccagactacaagtaccgacccagacgcaagaccaagactctg
ctcaaaaaagacaaataccccggaatgggtggaggcgggccagctgccggcggacaagga
ggtctcatccagcaacagtcgtccggcggcggaggcggacagagcggacatcatcaagat
catcaacacggcgggggcaatcaccagcgcggcggagggcacaacatgaacaacaattcc
gtcgtgctgggcagccaacagtcgggactgcagcagagccaacagggcggaggtggaggc
ctacactcgcaccacagcagtcaacgtgaagcggccatgtaccaccaccaccatcaacat
cacatggccaccaacggctacatgccaaacggctacagcatgatgcacgaccccaattac
ggccagcactacatggcggcagcggcggccggactctacggtccgcgatacgacatgaac
caggccggcggagtgccgggcggcggaagcgcatcccccatgtcctcctacatgaacgga
gcggcggcaaattacggagcaatgtacgccggaacgggaggcgccggatcgccctactcg
atgcaatcatcgcaaatgggaagcagtggcggacaggcgggcatcggaagcgtcggatcg
accggatcatctcacagccccaacagcgtcaaatcggaaacgccgacgccccaacagcaa
cagcaacagcaaatttctatcaagcgagaatacgtgcaacaacagcagccgacggccggc
ggagcaaacgcggcggatctacgtcacatgatttccatgtacttgccgggagacgcatcg
tcgggcatcatggatccgacgtgcggcggaagattgcagcccatccccggcctacagggt
catccagggtaccaccattcgggatcacctgatcccatgtccgccgctgcggcagcagcc
gcagccgcagcagccgccgcagccgccggaatgaccatggctcacatgtaa
DBGET
integrated database retrieval system
