Daphnia magna (water flea): 116923687
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Entry
116923687 CDS
T07514
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116923687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116923687
03036 Chromosome and associated proteins [BR:
dmk03036
]
116923687
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116923687
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
116923687
PBAF complex
116923687
GBAF(ncBAF) complex
116923687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_3
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
116923687
NCBI-ProteinID:
XP_032786083
LinkDB
All DBs
Position
LG5:12310324..12314486
Genome browser
AA seq
1095 aa
AA seq
DB search
MAFAPKKDGGPNLKFYESHETLLLFEGVKTWLLKHCKKYVQTDPPTAKSLSTSITQVIQF
QEDTYGKNVAKPPLTRIPTKCFLDFRPNGGICQILATVYKFRTDHGWRRMDFASPSRMDR
HIEMMMAIEKALIQAKCLVQPNIYIMPEVDKGIVGKLKEIVKRHQGLIAENEAEATHTVY
SATDPLEEEYARPLFRRDRNTLLHWYYFPDSYDKWDTIDLPVDPPELSDYLESLNEPHKT
YRVAANWLLDLDQYNEWMNEEDYEVDVNGKKKVHRLRLSVEDLMMGSENKQKGKTLKRRR
SPSPAGSGSTKAATTPSTAGGAGKRKGVRPSLLGKKFKGGEDDSDDLTRDMEDPPSDTNL
REVEVPKAHPVPGGPLPTTIKKDADWMPTKGAALTDLDEEGEKLADITLVTPQDDPHGQQ
VLLQQHDDNVTDQTHHIIIPSYAAWFDYNSIHSIERRALPEFFNGKNRSKTPEVYLAYRN
FMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLVNYQVDGDSRPMPVGPPP
TSHFHILSDTPSGLQPVNPPRTTQPSAAKTLIDMDKKTGGAARQSETAPVANNFGLKLDQ
YSRKSSSVLKNKATREWTEQETLLLLEGLELYKDDWNKVCEHVGTRTQDECILHFLRLPI
EDPFFEDVELGSGGALGPLAYQPVPFSQAGNPIMSTVAFLASVVDPRVAAAAAKAAMEEF
AKIKDEVPSALLETHMKNVEHAVNEGKADPTVAALTQSGIAGTVQDKEEAEREKEKEKAE
KLADEKEAEKKEEKKEADKKAEDKKETEKKESEKDDSAAVESGQEPEKDKKKPATETEED
KDKTEKMDVDASKETKEDGEGTKESVAKESESKEPEIKEEKMELGETKKDKESDDDKEKS
SEVSVALIADSEKQKLVKDAQLQAAAAASLSAAAVKARHLAAAEERKIKSLVALLVETQM
KKLEIKLRHFEELEAMMDRERETLEYQRQALLQERQAFHLEQLRAAEARARQQAQVQLQQ
QQMQQAQMQQQQQQVQQIPIIPNVQIPIGPPPSVATAGYTGSSPLPPQIQPSPQPHLPPP
TTPVPSSEIPTTLSV
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggctttcgcccccaaaaaagacggaggaccaaatttaaaattctacgaatcccatgaa
acacttttactttttgaaggggtgaaaacctggctgttaaaacattgcaaaaagtatgta
cagacagatcctccaacggcaaaaagtctttcgacttccataactcaagttattcaattt
caagaggatacatatggtaaaaatgtggccaaaccaccacttacaaggattccaactaag
tgctttctagactttcgacctaatggtggaatttgccagattttggctactgtttacaaa
tttcgcactgatcatggctggaggcggatggattttgcatctccctccagaatggatcgc
cacattgaaatgatgatggccattgagaaagcattaattcaagcaaaatgccttgtgcag
ccaaatatttatattatgcctgaagttgataaaggaattgttgggaaactaaaggaaatt
gtcaaaaggcatcaaggcctaatagcagagaatgaagcagaggcaacacacactgtctat
tctgctactgatccactcgaagaagagtacgcccgtccgttgtttcgtcgcgatcgtaac
accttgcttcattggtattatttccctgattcctacgataaatgggacacaatcgacctg
cctgtcgatcctccagagctttccgattaccttgaatccctgaatgaacctcataaaacg
tatcgagttgctgccaattggttgctcgatttagatcagtacaacgagtggatgaatgaa
gaagattatgaagttgatgttaatggcaagaaaaaagtgcacagacttcgtttgtccgtg
gaggatctaatgatgggcagcgagaacaaacaaaaggggaaaactctaaagcggaggcgg
tccccttcaccggctggtagtggctccacaaaagctgccaccactccatcgactgctggt
ggtgctggaaaacgtaaaggtgtccgtccgtctttgctgggtaaaaaattcaagggtggc
gaagatgacagcgacgacctcacacgtgatatggaagatcctccgtcagacactaatctc
cgcgaagtagaggtgcccaaagctcatcccgttccgggcggaccacttccaacaacaatt
aagaaggacgctgattggatgcctacgaaaggagctgcattgactgatttagatgaggaa
ggtgaaaaattggctgatatcacgttggtcactccgcaagacgacccacatggacagcag
gtactgctacaacagcatgacgataatgtcaccgatcagactcaccacatcattattcca
agctacgccgcctggtttgattacaattcgattcactcaattgaacgtcgtgcactgccg
gaatttttcaacggcaagaaccgatcaaagactccagaggtttatttagcgtatcggaac
ttcatgatcgacacatatcgtttaaatccgaccgagtatttgacgagtactgcttgtcga
cgcaatttggccggcgatgtctgtgccatcatgcgcgttcacgcctttttggagcaatgg
ggtcttgtcaactatcaggtcgatggggactcacgacccatgcctgtaggccctccaccc
acgtcacactttcacatcctctcagacacgccatcaggtctgcagcccgtcaatccccct
cggacaacgcagccatcagcagccaaaacgctgatcgacatggataagaaaacaggagga
gctgcccgccaatcagaaacagctcccgtggctaataatttcggcctgaaactcgatcaa
tacagccgtaaaagctcgtcggtgttgaagaacaaggcaacgagagagtggacggaacag
gagactctcttgttgcttgagggcctggagttgtataaggacgattggaacaaagtctgc
gaacacgtaggaacccgcactcaggacgaatgtattctgcactttcttcgtcttcctatc
gaagatccttttttcgaagatgtcgagttgggtagtggtggcgctctgggtcccttggcc
tatcagccagttccgttcagccaggctggcaatcccatcatgtcaacggtagcatttttg
gcttccgtcgtagaccctcgcgtggctgctgctgccgccaaagccgcaatggaagaattc
gcgaaaatcaaggatgaagtaccctcggctttgttggaaacgcacatgaagaacgttgag
catgctgtgaacgaaggcaaagcggatccaaccgtggcggctcttacccagtccggaatt
gcgggaacagttcaagacaaggaggaagccgaaagagagaaagaaaaggagaaagcagaa
aaattagcagatgaaaaggaagccgaaaagaaagaagagaagaaggaggcggataaaaag
gctgaagacaagaaggaaacagagaaaaaagaaagcgagaaagatgactctgctgctgtc
gaaagtggacaggagccagagaaagacaaaaagaaaccggcgacagaaacggaggaagac
aaagacaagacggaaaagatggatgtagacgccagcaaagagacgaaggaagatggagaa
gggacgaaagagtcggttgcaaaggaatccgaatctaaggagccagaaatcaaggaagaa
aaaatggaacttggcgagactaagaaagacaaagaaagcgacgatgataaagagaaatcc
tctgaggtatcggtcgcattgatcgccgacagtgaaaagcaaaagttggtcaaagatgct
caattgcaagccgcagctgcagcctcgctttctgcggccgccgttaaagcacgccacctg
gcagcagctgaagaacgcaaaatcaaatcactggttgctctcttggtcgagacgcaaatg
aagaaactagaaatcaaattgaggcactttgaagagctggaagccatgatggatcgcgaa
agagaaactttagaataccagcgacaggcattgttgcaagaacgtcaagcgttccatttg
gagcagctgcgggcagctgaggccagagctcgtcaacaagctcaggttcaactccagcag
caacaaatgcagcaggctcaaatgcaacaacaacagcaacaggtgcagcagattcccatc
atcccgaacgtgcaaatacccatcggtccacctccgtctgtagccaccgctggctacacg
ggcagctcgcctctcccgccacaaatccaacccagtccgcagccacatttgccacctcca
acgacgcctgtaccgtcatctgaaattccaacaactttgtcggtttaa
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