Daphnia magna (water flea): 116924888
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Entry
116924888 CDS
T07514
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B
KO
K11267
sister chromatid cohesion protein PDS5
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
116924888
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116924888
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
116924888
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
116924888
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT_GCN1
CTD1
Motif
Other DBs
NCBI-GeneID:
116924888
NCBI-ProteinID:
XP_032787358
LinkDB
All DBs
Position
LG6:complement(1120563..1127295)
Genome browser
AA seq
1365 aa
AA seq
DB search
MPGGGDTVTIIYPQGCKEVTEDLTPDELIRRLKTLAHTFQSMGQEEGAYQEFVPLALHLA
DDFFLQHHSRDVQLLIACCIADVLRVYAPDAPYTDPEQVKGIFLFLIRQLGGLKDPKDPA
FKRYFYLLENLAYVKSFNMCFDLEDCQEIFCELFKLIFKIVNDEHSGKVKSFMLDILCPL
ITESDSVSNELLDIILSNIVEPLKSQRKNAYKLARELLLKCSDTLEPYIQAFFNQVLILG
KEDKQLFIATKVYDLIYELYHVCSRVLLSVLPQLEFKLKSPDEQERMGCVSLLARMFSEK
DSQLATQHRQLWRAFLGRFNDISVAIRTKCVQYSMHFLLNHPELRQDVTETLKLRQHDAE
ESVRYEVVTAIVATAKRDFSIVSDSEDLVNFVKERTLDKKFKIRKEALTGLAMIYKTFLG
DPDVPETTKKAVTWIKDKILHGYYMTGLEDRLLVERLLNTCLVPYQLPADVRMKKLYYLY
ATIDENATKSFIELQKSQATVRKAVSDLTEVYNQLEPGENRDKEITTRVAQLSKYLPDPI
KAAEFIHKFAVNLANDSSMLQLLETVVNPEVSCKECAEAGTQLLKKLGQPVMTNLYYNTV
KLLMERISSVLIDKDAVTHLVQYVESCLRRDEGTMAEDIGIEPETAGEKGLRLLFVLAFG
FPAHFMSEDVLTRLVNILSLDSQDHSVSAMVLCILTFVGKYRPLEAQFRDIVSQLIPICE
RLATEGTTKQAKHAMRCLHVNITNHEQVFSKILESLKDNLTTSSPHCRTSIVTLGHMALL
LPDRFTIQIKNIVSRKIVKELLLKNHGEAQPISSDISNDEWCEEDQLAEETRCKIEAMKM
MARWLIGLKNDVMSAQKTFRMLTAFIQHRGDLFDGGRIGKTEMAWLRLSAGMAMLKICEQ
KGVGDQFTVDQFYSLSLLIADDMPEVRERFTAKLHRGLYRMPLRSLPLDFMGVYALAGTE
EDKRIKAIIRRSMLADISKRRDYQRELQMSGSMERMADKLPYILPDYMLVYAVPILAHDP
EFTSHTNTEQLLRIRQCLWFVLEPLMNKHENYCFGFYKALIERMKNHRDALKPDDEESNA
KLWAVCDLAMGLIMQKTTSFEMKDYPTQPRIPSMYFRTHDDPNFLNSKIYLPPELQIAPP
KKASTVGGGGIGSGLVKVSALKSFSGASMRGKGGRRGRPPKQDLDDVESDEEPEESFDQT
VMQSASNTDESGATRRSSRIRTSAPHTSIAANSGSEDSQEATTPISKEKPKTAGAKITSY
FSPKQRAAAAASLTVDSDNSNMSQNNGTEDQLEPTEQPLESLPKRRGRPPRNPASGMNEK
EVESSSAAEEETEAEVKSRKRSKEDEKDTTVVTPARKSARLAKPN
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgcctggaggaggcgacactgtgacaataatttacccccaagggtgtaaagaagtcaca
gaagatcttactcctgatgaacttattagaagactaaagaccttggctcatacgtttcag
tctatgggacaagaagaaggagcttaccaagaatttgtaccacttgctcttcatttggct
gatgattttttccttcagcatcattcacgggatgtccaactgttgattgcttgttgtatt
gctgatgttttacgcgtctatgctccagatgctccttacacagatccagaacaagtaaaa
ggaattttcctttttctgattcgccaattagggggcctgaaagatcctaaggatcctgca
ttcaaacgttatttctatcttcttgagaaccttgcatatgttaaatctttcaacatgtgc
tttgaccttgaggattgtcaagaaatcttctgtgaattattcaaactgatattcaagatt
gtcaatgatgaacattctggtaaagtgaagagtttcatgcttgatattttatgcccgctc
ataaccgagtcggactcggtgtctaatgagctgctggatataatattatcgaacattgtt
gaaccactaaaatctcaacggaaaaatgcatacaaacttgcaagggaactgctattaaag
tgtagcgatactctggaaccctatatccaagcgttttttaaccaagtacttatcctcgga
aaagaagacaaacaactgttcattgctaccaaagtgtacgacttgatttatgaactttac
catgtgtgctcccgagttctgctgtccgttttgcctcagctggaattcaaactgaaaagt
cctgatgaacaagagaggatgggatgtgtttcacttcttgccagaatgttttcagaaaaa
gattcgcaacttgccacccaacatcgtcagctctggcgggcttttcttgggagatttaat
gacatcagcgtagccatccgtacgaagtgtgtccaatattctatgcatttcttgctaaac
catcctgaattgaggcaagacgtaaccgaaactttaaagcttcgtcagcatgacgcagag
gaatctgttcggtatgaggtggtgacagcaatagttgccacggccaagcgggacttctca
atagtttcagacagtgaggaccttgtaaattttgttaaagaacgaacgctggacaaaaag
ttcaaaattcggaaggaggccttaacaggattggctatgatttataagacttttttgggt
gatcctgatgttcctgaaacgacaaaaaaagcagtgacatggattaaagataaaatctta
catggttattacatgaccggacttgaagatcgacttcttgttgaacgcctcctcaatacg
tgtctcgtaccgtatcaattaccagccgatgttcgaatgaaaaagttatattacctgtac
gctactatcgacgaaaacgctaccaaatcattcatagagcttcagaaaagtcaagccacg
gttcggaaagcagtgtcagacttgacagaagtttacaaccaacttgaaccaggcgaaaac
cgagacaaggaaattaccaccagagttgcacaattgtccaaataccttccagatccaatc
aaagcagctgaattcatacacaagtttgccgtcaatttggcgaacgatagcagtatgctt
caattactggaaaccgttgtgaatccagaagttagttgtaaggagtgtgccgaggctggg
acgcagttattgaaaaagttaggtcaaccggttatgacaaacctttattacaatacggtg
aaattattaatggagcggatctcttcagtgctcattgacaaagatgctgttacacatttg
gtccaatatgtggaatcctgtttgaggcgtgacgaaggtacgatggctgaagatatcggt
atcgaaccagaaacagccggtgaaaagggcctccgtcttctgtttgttctcgctttcgga
tttccagcgcactttatgtcggaggacgttttaactcgacttgtgaatattctatcactt
gatagtcaagatcatagtgttagtgccatggtattgtgtatcctcactttcgttggaaag
taccgacctttagaggcccagttccgagatattgtcagtcagttaatcccaatctgcgaa
cgtttggcaactgaaggcactacaaaacaagctaagcatgccatgcgttgcctccacgtg
aacattacaaatcacgagcaggttttctcgaaaattttggagtcgctaaaagacaactta
actacgtcttcccctcactgtcgtacctcaatcgtgacccttggtcacatggcgctttta
cttcctgaccgctttactattcagattaaaaacatagtttccaggaagattgttaaagag
ctgctgcttaagaatcatggagaagcacagcctatttcatccgatatatcaaacgacgaa
tggtgtgaggaagatcaacttgcagaagaaacgcggtgtaaaattgaggccatgaaaatg
atggcgagatggttaatcggtctaaagaacgatgttatgtcggcccaaaaaacatttaga
atgttaacggcttttatccaacatcgaggagatttatttgatggtggacgaatcggaaaa
actgaaatggcctggctaagattgtctgctggtatggcaatgttgaagatctgtgagcaa
aaaggagtaggagatcagttcaccgtcgaccaattctacagtctttctctcctgatcgct
gacgatatgccagaagtgcgggagcgcttcactgctaaattgcatcgaggtctctatcga
atgcctctacgttcccttcctcttgattttatgggagtctatgctttggcgggaacagaa
gaggacaagcgtattaaagcaattattcgtcggtccatgttagctgatatatcgaaacga
cgcgattatcagagagagcttcaaatgtcaggaagcatggagcgaatggccgataagctg
ccctatatcttgccggactatatgttggtttatgcagtacctatactggcccatgatccg
gaattcactagccacacaaatacagaacagctacttcgcattcgccaatgtctttggttc
gttctggaaccgctaatgaacaaacacgagaactattgttttggcttttacaaagcattg
atagagcgtatgaaaaaccatcgtgatgctctaaagccggatgacgaagaaagtaatgca
aaactgtgggctgtgtgtgacttggcaatgggtttaattatgcaaaaaacgactagcttc
gaaatgaaagactaccccactcagccaagaattccatctatgtacttcaggactcacgat
gatcccaactttttaaactcgaagatttatttgccacctgagttacaaatagctcctccc
aagaaagctagtaccgttggcggagggggtattggaagtggactggttaaagtatctgca
ttgaagtccttctcgggagcaagcatgcggggtaaaggtggaagaaggggtcggccgcca
aagcaagatcttgatgatgttgagtcagatgaagaacctgaagaatcttttgaccagacc
gttatgcagtctgcctctaatacggatgaatccggggctactagacgatcttcacgtatt
cgtacatcagcaccgcacacttcgatcgctgccaacagtgggtcagaagattcccaagaa
gcaaccacacctatttccaaagagaaaccgaaaacggcaggagctaaaataacttcctat
ttttcaccgaaacagcgagcggctgctgctgcatcattaacagtggattctgataattct
aatatgtcacaaaacaatggaactgaagaccagttggagcccacggaacagccgttagaa
tctcttccaaaacgtcgtggacgacctccccgcaaccctgcatctgggatgaatgaaaaa
gaagtagaaagtagttcagctgccgaagaagaaacggaggcggaagttaaatcgagaaag
agaagtaaagaagacgagaaagataccacggttgttacacctgctcggaaatccgcgcga
ttggccaaacccaactaa
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