Daphnia magna (water flea): 116925670
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Entry
116925670 CDS
T07514
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmk03016
]
116925670
Enzymes [BR:
dmk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
116925670
Transfer RNA biogenesis [BR:
dmk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
116925670
Prokaryotic type
tRNA splicing ligases
116925670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Adeno_PX
Motif
Other DBs
NCBI-GeneID:
116925670
NCBI-ProteinID:
XP_032788284
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All DBs
Position
LG6:1551175..1553696
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AA seq
505 aa
AA seq
DB search
MPRSYEEELKFIERLSPYSWRIKKGFVPNMKVEGIFYVNNNLENLMFEELKASSAQGLVG
GFLPGMKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNVAAFDMDDPNSIVSPGGVGFDI
NCGVRLLRTNLTEKDVQPVKEQLTQSMFDHIPVGVGSKGVIPINAQDLEEALEMGVDWSL
REGYAWAEDKEHCEEFGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDK
WAATKMGIEHKGQVCIMIHSGSRGFGHQVATDALVTMERAMKRDNIVTNDRQLACARISS
TEGQDYLKAMSAAANFAWVNRSSMTFLCRQAFAKQFNSTPDDLDMHLIYDVSHNIAKVEQ
HTVNGKLKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYILTGTEKGME
ETFGSTCHGAGRALSRAKSRRNLDYTEVLDRLKEQGISIRVASPKLVMEEAPESYKNVTD
VVDTCHAAGISKKTVKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgccccggtcatacgaagaagaactgaagttcatagaaaggttatctccttattcttgg
cgcatcaaaaaaggatttgttcctaatatgaaagttgaaggcattttctatgtcaacaac
aacttagagaatctgatgtttgaagagctgaaagcctctagtgctcaaggcctagttggg
ggatttcttcctggaatgaagcaaattgccaatgttgctgccctgcctggaattgttgga
cgatctattgggttacctgatgttcattctggctatggctttgcaattggaaatgtagct
gcatttgatatggatgatccaaattccatagtatctcctggcggagtaggatttgatatt
aactgtggagttaggttgctgaggacaaaccttactgaaaaagatgttcagcctgttaaa
gaacaattgacccaaagcatgtttgatcacattcctgttggtgttggatcaaagggagta
atccctataaatgcccaggatctcgaagaagctttagaaatgggagtagattggtcgctc
cgcgaggggtacgcttgggcagaagataaagaacactgcgaagaatttggccgaatgttg
aatgccgatccttcgaaagtcagtctcagagctaaaaagaggggacttcctcagttgggc
actcttggagccggtaatcattatgcggaaatccaagtagtggacgagatctatgacaag
tgggccgccaccaaaatggggatagaacacaagggccaagtttgcatcatgattcattcg
ggaagcagaggattcggccaccaagtagccaccgatgctttggttaccatggaaagagca
atgaaaagagataatatcgtgaccaacgatcgtcaactagcgtgtgcccgaatttcttca
acggaaggccaggactatttaaaagcaatgtcagcagctgcaaatttcgcctgggttaat
cgatcttccatgactttcctctgtcgccaagctttcgctaagcagtttaactcgaccccg
gatgaccttgacatgcatcttatatacgatgtatcgcacaatattgctaaagtggaacag
catactgttaatggtaaactaaaaacattactggtccatcgaaagggctcaactcgagct
ttcccgcctcaccatccattaattccggtcgactaccagctaacgggtcagcctgttctc
attggaggaacaatgggtacttgtagctacatcttgaccggtacagaaaagggaatggag
gaaacctttggttcaacctgtcacggagcgggacgagccttatctcgcgcgaaatcccgg
cgaaatttggattacaccgaagttttggatcgtttgaaggagcaaggcatttctatcaga
gtggcatctcccaagctggttatggaagaggctccagaatcttataaaaatgtaacggac
gttgtcgatacttgtcacgctgctggaatcagcaaaaaaactgttaagctccgcccaatt
gctgtaattaaagggtaa
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