Daphnia magna (water flea): 116925798
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Entry
116925798 CDS
T07514
Name
(RefSeq) exosome complex exonuclease RRP44
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116925798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116925798
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116925798
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Motif
Pfam:
RNB
OB_Dis3
Rrp44_CSD1
PIN_4
CSD2
Rrp44_S1
Dis3l2_C_term
OB_RNB
Motif
Other DBs
NCBI-GeneID:
116925798
NCBI-ProteinID:
XP_032788455
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All DBs
Position
LG6:8003956..8008014
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AA seq
958 aa
AA seq
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MDMLTSKIFLRKTKRGKVLKVVREHYLRDDLWCGSDLCKKCNQENSEVLDDAPISSSTLC
ACPHYVVVDTNVVLHQIDVLESPAWKNVIVLQTVLEETRKRSTNNFKKLKEIMATRKDSF
YVFVNEHHKDTYVERKPGESANDRNDRAIRKACSWYQTHLEESQQGREKKKKVQIILLTQ
DFKNREQALKEGIPAYRVDEYVKSLKDFPDLQEKLAASHSDDNAENREPLFPEHWAPTRI
MTGIKSGKLLQGIFHCSRENFLEGSVSVEGQDKSILLQGHASLNRAVDGDIVAVELLPED
KWTSPSGIVLEDQEDQDPGDQIEKEEALLTNSTKGKDLQPTGKIVGIIRRKWRQYCGILL
PSVLAEGTRHLFVPAERKIPKIRIETRQAATLSSQKIIVAIDSWPRTSRYPLGHFVRALG
NIGDKDTENEVLLLEHDVPHHSFPETVLACLPSMPWMISQEEVKRREDLRNLDICSVDPP
GCTDIDDALHFRELSPNLYEIGVHIADVSHFVRPDTALDKEAANRGTTVYLVDRRIDMVP
ELLSSNLCSLRPDQERLAFSVIWEVTPNAEIKKTRFTKSVIRSRRAYTYAEAQCSIDDPL
QQNELAKSLRGLNKLAKIMKKNRMEKGALQLSSPEIRFEVSTETNDPIDVISKPMLDTNS
MVEEFMLLANISVAEHIFKHFPECAVLRRHPVPPESNFEPFLKAGKTQGFTLDVSSNKSL
AASLDAAVKPDNVYMNTMLRILATRCMMQAVYFSSGTVAQVDFYHYGLAAPIYTHFTSPI
RRYADLLVHRLLAVAISADVTYAELLDRKCVQQLCNNLNYRHKMSQYAQRSSVALHTHLF
FRHRVQDEDAYVLSVRQNALQVLIPKYGLEGSIYLKEKDEDSKSAFIYNPDEPSQTCDNI
TIRTFDRIVVQVSLDSKYVQHQKIAVHLVQPQIAGLSVEPIKTVNVSEPTPKKLKSGN
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggacatgcttactagcaaaatatttttacgaaaaacgaagagaggaaaggttctaaaa
gttgttcgagaacattatcttcgagatgatctttggtgtggttctgatctgtgtaaaaaa
tgcaatcaggaaaacagtgaagtactagacgatgcgcctatttcatctagcacactttgt
gcatgtccacattatgttgtggtagacaccaatgttgtacttcatcagattgatgttctt
gaaagtccagcatggaaaaatgtcattgtgttgcaaaccgtattggaagaaacaaggaaa
cgtagtacaaataattttaaaaaattaaaagagatcatggcaaccagaaaagatagcttc
tacgtgtttgtcaatgaacaccacaaggacacatatgtagaaagaaaacctggtgaaagt
gcaaatgatcgaaatgacagagcaatacgaaaagcatgcagctggtatcagactcacttg
gaagaaagtcaacaaggaagggaaaagaagaaaaaggtccaaattattcttttgactcag
gatttcaagaacagagaacaagcattaaaagaaggaataccagcttatagggtggatgaa
tatgttaaaagcctgaaagatttccctgatctccaagaaaaattagcggcatcgcattcc
gatgataatgccgagaaccgggaacctttgtttcccgagcattgggcgcctacccgaata
atgactggaataaaatctggcaaactacttcaaggaatttttcattgttccagggaaaat
ttcttggaagggtctgtcagtgttgaggggcaagataaatccattcttctgcaaggccat
gccagtttaaaccgtgcagttgatggagatattgttgccgtagaattattaccagaggac
aaatggacgtcgcctagtggtattgttctggaggatcaagaggaccaagatcccggtgat
caaattgaaaaggaagaagcgctattaaccaatagcaccaagggcaaggatcttcaaccc
actggcaaaatcgttggaattattcgtcgcaagtggcgccagtattgcggaatattgctt
ccgagtgtgcttgccgaaggaactcgacatctattcgttcctgccgaaagaaaaattcca
aaaattcgaatcgaaacgcgacaagctgcaacattgtcttcgcaaaaaattattgttgcc
attgattcatggcctcgtacttccagatatccacttggtcactttgttcgtgccctgggt
aatattggtgataaggataccgaaaatgaggttctgttattggagcatgatgtaccacat
cacagcttcccggaaacagtactggcgtgtttgccttccatgccctggatgataagccaa
gaggaagtgaaacgtcgtgaagacttacggaacctggatatttgcagtgttgatccccct
ggatgtacagacattgatgacgcgctccatttcagagaattatcgccaaacttatacgaa
attggagttcatattgcggacgtgtctcatttcgttcggccagatactgccctggataaa
gaagctgccaatagaggaacgacagtttaccttgttgaccgccgaatcgacatggtcccc
gaacttctaagttccaatctttgttctttaagaccagaccaggagcgccttgcgttttct
gtcatttgggaagtgactccaaatgctgaaattaaaaaaactcgcttcactaaaagtgta
atccgttcccgtcgagcttatacttatgctgaggctcagtgtagtattgatgacccgctt
cagcaaaatgagttggctaaaagtctccgtggattaaacaagttggccaaaataatgaaa
aaaaatcgaatggaaaaaggtgcattacaattatcaagcccggagatcaggtttgaggtg
agcaccgaaacaaacgaccctattgatgtaatttcaaagcctatgcttgataccaatagc
atggtggaagaattcatgttgttggccaatatttcggtagcagaacatattttcaagcat
ttcccagaatgtgctgttctccgccgtcatcccgtccctcctgaatcaaactttgaacca
ttcttgaaagcaggaaagacacagggattcacgttagacgttagtagcaacaaatcgttg
gccgcttcactggatgcagctgtcaaaccggataatgtgtacatgaacaccatgttgcgt
attttggcaacgcgttgcatgatgcaagcagtctattttagcagcggaactgttgctcaa
gtagatttttatcattatggtttagctgcaccaatttacacccatttcacatctcccatt
cgcagatatgcagacttgctggtccatcggctcttggcggtagccattagtgctgatgtg
acatacgctgagttgcttgaccgaaaatgcgttcaacagttgtgcaataatcttaattat
cggcacaaaatgtcgcagtatgcacaacgatcttcagttgcactacacactcacttgttc
ttccgccaccgtgtccaggatgaagacgcctatgttctttccgttcgtcagaatgctctg
caagtccttattccaaagtatgggctggaaggctccatttatcttaaagagaaggatgaa
gattctaagtccgccttcatctacaatccagacgagccttctcaaacttgtgacaacata
actattcgaacatttgatcgtattgtggtgcaagtgagcctcgattcaaagtatgttcaa
catcagaaaatagccgttcatctagttcaacctcaaatcgcaggattgtctgttgaacct
attaaaactgtgaacgttagtgaacctactcctaaaaagttaaaatcaggaaactga
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