Daphnia magna (water flea): 116925905
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Entry
116925905 CDS
T07514
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116925905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116925905
Spliceosome [BR:
dmk03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
116925905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EML
ANAPC4_WD40
PRP4
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SCAP
Beta-prop_RIG_2nd
eIF2A
Beta-prop_Vps41
Ge1_WD40
Beta-prop_IFT140_1st
WD40_like
Beta-prop_IFT122_1st
Beta-prop_NWD2_C
Nbas_N
Beta-prop_HPS5
WD_LRWD1
Beta-prop_WDR75_2nd
Motif
Other DBs
NCBI-GeneID:
116925905
NCBI-ProteinID:
XP_032788553
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Position
LG3:complement(10328672..10330552)
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AA seq
432 aa
AA seq
DB search
MSLQSGFAITIDDVEIRRHLRQLGEPITLFGEGPADRRIRLKDLIAIHGNDVVDRKKEDD
REVVKQEKDQSETTWYHEGPESLKISRLWLAYYSLPRAKQRLSDVKIEMETPESTRTAKR
QEMVKQMRNMNIMCSQVGDGRPVSFCQFSPNGNFLATASWSGLCKLWNVPDCSLFRSLRG
HKCSVGAIVFHPQSTLSLESSELNMASCSMDGAVKLWNLESEEPIADMEGHAPHRVSKVE
FHPSGRFLATCVFDNSWRLWDLQQGVEVLHQEGHSKPVYNIAFNIDGSVAVTGGMDSFGR
VWDLRTGRCIMFMEGHLKGILGIDISPNAYHIVTGSEDNTCKIWDLRKRSCIYTIPAHTN
LVSSVKFEKSSGQFIVSSSYDGTAKIWASNTWQPLKTLSGHDGKVMAVDVSPDGSFIATA
SYDRTYKLWSPE
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcacttcaaagtggttttgctatcacaattgacgatgttgagattaggagacatctt
aggcagttaggtgagcccataaccttgtttggtgaggggcctgctgaccgtcggattagg
ttgaaagatttaatcgctatccatggtaatgacgtggtggatagaaaaaaagaagatgac
agagaagttgtaaaacaagaaaaggatcaaagtgaaacaacatggtatcatgaaggccct
gaatcgctgaaaatttctcgcctttggcttgcatattactccctcccaagagctaaacaa
aggttgtctgatgtcaaaattgaaatggaaacaccagaatcaacaagaactgccaaaaga
caagaaatggtaaaacaaatgagaaatatgaacattatgtgcagccaggttggtgatggg
agaccagtgtcattttgtcaatttagccctaatggaaattttctggctacagcatcatgg
agtggactttgtaaactgtggaatgtccctgactgctcattgtttcgttccttgcgtgga
cacaagtgtagtgttggagcaattgtttttcatccccaatcaactttaagcttggaatct
tctgaattaaacatggcatcctgttctatggatggtgcagtaaaactgtggaatttggaa
agtgaagaacccatcgccgatatggaaggtcatgctcctcaccgggtgtctaaagttgaa
ttccacccatcaggaagatttttagccacatgtgtgtttgataattcatggagactttgg
gacttgcagcaaggtgttgaagttcttcaccaagaagggcattccaaacctgtatataac
atagcgttcaatattgatggatcagttgctgtcacaggtggcatggattcgtttggtcga
gtttgggatcttagaactggacgctgcatcatgttcatggaaggtcatcttaagggaatt
ttgggcattgatatatcaccaaacgcatatcacattgtaacgggaagtgaagacaacaca
tgtaaaatatgggatctaaggaagaggtcttgtatttacaccattcctgcccacacaaat
ttagtatcaagtgtgaaatttgaaaaaagctcagggcagtttattgtctcgtcatcctat
gatggtacagccaagatatgggcgagtaacacttggcaaccgctaaagacgctttcggga
catgacggcaaggttatggctgttgatgtgtcacctgatggttctttcatcgcgacagct
tcgtatgatcgcacttacaagctttggtctcctgaataa
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