Daphnia magna (water flea): 116925944
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Entry
116925944 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 4
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
116925944
Membrane trafficking [BR:
dmk04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
116925944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
SGL
cEGF
EGF_LRP2
Vgb_lyase
EGF_CA
EGF
Motif
Other DBs
NCBI-GeneID:
116925944
NCBI-ProteinID:
XP_032788600
LinkDB
All DBs
Position
LG6:complement(10004739..10016534)
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AA seq
1998 aa
AA seq
DB search
MSVSPSVSISRVIPMAGSLMLLLLLLLCHSTGCANLTPEPSEPSRPALKTARLNVNQTRL
ATTTTTTTTTTLSPVGAKTTTRTSNSGGGVKITSKPDCKCRPEEFTCSSSMSTGSSSTSN
NSRRKGQLSFTVKQHKSQNGTTNGQKSTNVLAVQQQQGSGCVCIPLSWMCDGNQDCDHGE
DETDCSEIACQGIRCRSGSGGQTTPRCIQPEWLCDGDDDCGDNSDEIHCEVSRNCTASSF
RCPNNGNCIPQVWVCDGDPDCDGGADERDCSVLLTRTCPPSQHRCGNGACLPAEWRCDGD
PDCSDMSDEMGCQQTGDGGADGAFDQNCGAEEFQCASGHCIKGAYRCDGEIHCKDVSDEL
DCGSLLRRCADGDFRCPDGQCIAQAWRCDGEQDCEPGVDEENCDSNTVAGGASHTCGPNQ
MACSSSTGKNGSCISTSWLCDGETDCPDGQDEQNCPANHCGKDQFSCTNDTCVGFSRVCN
GERDCPGGEDELDCTIQKECDAGSRCQHTCLVLSNGTGTCGCRSGFRLTNDGVSCVDVDE
CATESYCSQLCTNTVGGFSCSCVDGYVLRPDKTSCKALGQPVRLIFANRVDIRQVSLFEE
EYTSVIDGLQNAIALDFHYRKGIVIWSDVTLDVIKRAYLNGTAMPDAVWWGLKSPSGVAI
DWIHDNLYWTDSEVRRIDVSLLDGTMRRTLVWENVEKPRAIAVHPGAAAVFWTDWGHQPR
IERSDMDGSNRQILVTENLVWPNGLTIDYTVDHIYWADAKHHVIESVRLDGSGRRRVMER
GLPHPFAITIFEDSLFWTDWHTKSIHQANKLTGHDIRTVRTNLHYPMDIHSIHPLRQPDY
ANRCGSNRGGCSHLCLPNRSSYTCACPPGLQLISPGGRTCTSQPGELLIFAQKSELRMFP
LNITGEVDHVLPLTGVRSAVALDWDGASQTIFWTDVQSDVINRAFWNGSNQQTLVADDLE
SPAGLAVDWVTVPGKLYWTDAGTNRIEVSNLDGSLRSLLIWDGLDRPRDIVVDPIGGYMY
WTDWGQTPKIERAGMDGSQRSVIVISNLTWPNGLAIDHEGERLYWADGGTKAIEYASLDG
KNRTVLISAELPHPFGLALFENQIFWSDWDTAAIHSTDKLNAKRRTMIRSGLEDLMDVRV
YHSNRYSVPSLCQSHNGGCSHLCLLAPLPAGHSCACPTGIKLSADGRTCRSSPSTSLIFA
QRSKLRRMSLDMPYLIDVVLDLPPQKNVVTLDVDRVTGHVIWSDTTQDKIFRTLPVGTSA
PSAVEVIAFNLDTVEGLAIDEINRKLYWTDAGRSSLEVAELEDGTNRKVLIWTLMDKPRG
LVLSHSTGILFWADWGKQPRIEQADMDGRNRKVLVSTDLGWPNSLTVDHAANTLYWTDAR
KKTIESCDLSGLHRREVLSGLSHPYGITVLDSYIYWTDWETKSLQRADKNTALDRSTIRA
GLDDLMDITAWKETDVSSHRENPCGKNNGGCSHLCLRSPWGRGYSCSCPTGILMSPDGST
CQASPNSFLLYATRNTLSSISLDTADQWDVALNVPGVHNAIGVDFHWVRQRFYYTDVYLD
VIRSVDARNVSNVETLVSSNLTTPDGLAVDWLADNLYWTDAGRNVLEASRLDGTNRKIII
GSGLDEPRAVAVFPQRGLLYWTDWGQSHKIERSFLDGSNRVAIVTSELGWPNGLAIDYEG
QRLYWADAQLDRIETSDLSGRFRVQLVQGATHPFGLTQLGGFLYWTDWRSKSIERVDKAT
GKQRSVLRHGLEGLMEIRAVAREKQLGKNPCSTGNGGCTHLCLFRALSYVCACPDIPDEI
PCSFSVVNISASEDYWSPALDPFENDLEPTGDLYPHNPFRLDPSASAGVLHPSMIVLLVV
GMAALLAAMAVLLIKWQRRRYRDCPWNSSRGPRQPQQVSVLTFTNPNYSPSAPDVVVAEK
KGFSWQRWKYDRTQERVYDMQDEKQSQTEAASLIPHSQPPPEVETDLEAETDVIESSSGP
SSTPPPTPPLRMDSICLQ
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcagtccatcagtcagcatctctcgtgtgatcccaatggcaggcagcctgatg
ttgttactgttgctgctgttgtgtcactccaccggatgcgccaatcttactccagaaccg
tctgaaccgtcccgacctgctctaaaaacggcccgtttaaatgtgaatcaaactcgactg
gccacaacgactacaacaacaacaacaacaacattatctcctgtcggagccaaaacaacg
actcggacgtctaacagcggtggcggcgtcaaaataacgtcaaaaccagactgcaaatgt
cgtcccgaagagtttacctgttcttcttctatgtctaccggtagcagctcaaccagtaat
aacagtcgccgtaagggccaactgtccttcactgtcaagcaacataaaagccaaaacggc
accacaaacggccaaaagagcaccaatgtcttggctgttcagcagcaacaaggatccggc
tgcgtctgcatccctttgtcgtggatgtgcgacggtaatcaagactgcgatcacggcgaa
gatgaaaccgattgcagcgaaatcgcgtgtcaaggcatccgttgccggagcggctcggga
ggacagacgacacctcgatgcattcaacccgaatggctttgtgatggcgatgacgactgt
ggcgacaattctgatgagatccattgcgaagtcagtcgaaattgcacggctagttctttt
cgatgccccaacaacggcaattgcatcccgcaagtttgggtgtgtgatggcgatccggat
tgcgacggaggggctgacgagcgagactgttccgttttgctgacgaggacgtgcccgcca
tcgcagcatcgctgcggcaatggcgcctgtttgccggccgaatggcgctgtgatggcgat
ccagactgttccgacatgtcggatgaaatggggtgccaacaaacgggagacggcggagca
gatggagccttcgatcaaaactgtggagccgaggagttccagtgcgcatccgggcattgc
atcaaaggagcctatcgctgcgacggagaaatccattgcaaagatgtcagtgatgaacta
gattgtggttcgttacttcggcgctgcgccgacggagattttcgttgccctgacggccaa
tgcattgcccaggcttggagatgtgatggcgaacaagactgcgagccgggagtagatgag
gaaaactgcgacagcaacactgtggccggtggagctagccacacttgcgggcctaaccag
atggcttgctcatcttctactgggaaaaatggctcttgcatctcgacttcctggctctgc
gatggtgaaaccgactgtccagacggccaagatgaacaaaactgcccagccaatcactgc
ggtaaagaccagttttcctgcaccaacgatacatgtgtcggattcagtcgtgtttgcaat
ggcgaacgtgactgtcctggaggtgaggacgaactcgattgcacaatccaaaaagaatgc
gacgctggaagccgatgccagcacacttgtctcgttctatccaacggaacgggcacttgt
ggatgcaggagcggatttcggttgaccaacgatggtgtttcttgcgtcgatgtcgacgaa
tgcgcaactgaatcgtattgcagccaattgtgtaccaatacggtgggtggatttagttgt
agctgcgtcgatggctacgttttacgtcccgacaagacgtcgtgcaaagccctgggacag
cctgtccgcctcatctttgccaatcgagtcgacattcgtcaagtttcactctttgaggaa
gaatacacttcagtcattgatgggcttcaaaatgccatcgccctcgattttcactaccgt
aaaggaatcgtcatttggtcggacgtgacactcgacgttatcaaacgggcgtatctcaac
ggtacagctatgcccgacgccgtttggtggggcctaaagagtccaagcggagtagctatc
gattggattcacgataatttgtactggacggattctgaagtgcgaaggattgacgtgagt
ttattagacggaactatgcgccgaactctcgtctgggaaaacgtcgagaaacctcgagcc
attgcggttcatccaggagcagcggctgtcttttggaccgattggggacaccaaccgcga
attgaacgttcagacatggacggatctaatcggcagattctggtgacggaaaacctcgtt
tggcctaacggactaaccatcgactacacggtcgatcacatttactgggctgacgcaaag
caccacgtcattgaaagtgtcaggctcgatggtagcggccggaggagagtgatggaacgc
ggattaccgcatcccttcgccatcaccatcttcgaggattccctcttttggactgattgg
cacaccaaaagtattcatcaagcgaataaactaaccggccacgatatccgaacggtgcgg
accaacttgcattatccaatggacatccacagcattcaccctttaaggcaaccggattat
gcgaaccgttgtggtagtaatcgaggcggttgttcgcatctttgcttacccaaccgatcg
tcttacacgtgcgcttgtccacctggattacaactgatctcgcccggtggtcgcacttgc
actagccagccaggagagttgctgattttcgctcaaaagtcggaattgagaatgttcccg
ctcaacatcaccggtgaagtggatcacgttctgccattgacgggagtacggtcggctgtc
gctctcgactgggacggtgccagtcagaccattttttggaccgacgtccagtcggatgtc
atcaaccgagccttctggaacggttccaaccaacagacgcttgtcgccgacgatctggaa
tcgccagccggtttggccgttgattgggtgacggtgccgggaaaactgtactggaccgat
gctggaacgaatcgcatagaagtgagcaacttggatggctctttgcggagtttgttgatc
tgggatggactggatagacccagagacatcgtcgtagatccaattggcggctacatgtac
tggaccgattggggtcagacaccgaaaatcgaacgagctggcatggatggctcacagcgc
tctgttatcgtcatcagtaatctgacgtggccaaatgggttggccatcgatcacgaaggc
gagagactttattgggccgatggaggcactaaagctatcgagtacgcttcgttggacgga
aagaatcggactgtgctgatcagcgctgaacttccccatccgttcggattggctttgttc
gaaaaccaaatattttggtccgattgggacacggctgccattcacagcactgacaaactc
aacgccaagcggcgcactatgatccgttccggactagaggatttaatggacgttcgagtc
taccattcgaaccgctattccgtaccatcactgtgccaatcgcacaatggtggatgttct
catctatgtttgctggccccccttcctgctggccattcgtgcgcttgtcctactggaatt
aaactttccgcggatgggcgaacctgtcggtcctctccctctacttcgcttattttcgca
caacgttccaagctccgccgaatgtctctcgatatgccctacctgatcgacgtcgttctc
gatttgccccctcaaaagaacgtggtgacgctggatgttgatcgcgtgacggggcacgtc
atatggtcggatacgacccaagacaaaatcttccgcactttacctgtaggcacgtcagct
ccctctgccgtagaggttatcgcctttaacttagacactgtagaaggattggccatcgac
gagattaaccgaaaactgtattggactgatgcgggccgttctagtcttgaagtggccgaa
cttgaggatggcaccaaccgaaaagttttaatttggaccttgatggataagcccagaggt
cttgtccttagtcactctacgggcatcttgttctgggccgactggggcaaacagccgagg
atcgaacaagcggatatggatggacgtaaccgcaaagtgttggtatccactgacctcggc
tggcctaattcgttaacagttgatcacgcagccaatacgctctactggacagacgcccga
aagaaaaccatcgaatcctgcgatctatcaggtcttcatcgtcgagaagtattaagcgga
ttgtcgcatccatatggcatcacagtactagattcgtatatctactggactgactgggag
accaagtcgttgcaaagggctgacaagaatacggcgcttgatcgatcgacaattcgcgct
ggccttgacgatctcatggacataacagcttggaaggagacggatgtttcgtctcaccga
gagaacccatgtgggaaaaacaatggaggatgttcgcatttatgtctgcggagtccttgg
ggtcgcggctactcttgcagttgccctaccggcatcctgatgagtcccgacggatcgaca
tgtcaggcgtcaccgaattcatttttgctttatgccacacgcaatacactttcgagcatt
tcgttggacacggccgatcagtgggacgtggctcttaacgttcccggtgtccacaatgcg
attggcgtcgattttcattgggttcgccagcgattttactacaccgatgtctatttggat
gtcatccgcagcgtcgatgcccgtaatgtttccaatgtcgaaacactcgtttccagcaat
ttaactacaccagacggacttgctgttgactggctggctgataacctctactggacggat
gcgggtcgtaacgtgctagaagcatcgcgtctagatggaaccaacagaaagattatcatc
ggtagcggattggacgaaccccgcgcagttgccgtctttcctcagcgagggctgctctac
tggacagactgggggcagagtcacaaaatcgaacgttcatttttagatggatcgaatcga
gtcgccattgtcacttcggaactaggatggccaaatggtctcgctatcgactacgaaggc
cagcgactttactgggctgatgctcaacttgatcgaatcgaaacgtccgacttaagtggc
cgcttcagggtccaactagtgcaaggtgccactcaccctttcggcttaacccaactgggc
ggatttctttattggaccgattggaggagtaagtcgatcgagcgtgtggataaagctacg
ggcaaacagcgatcagttttgcgtcacggcttggagggtttgatggagatcagggctgtg
gccagagaaaaacaattgggcaaaaatccttgttccaccggcaacggaggctgtactcat
ctttgtcttttccgagctctctcatacgtctgcgcttgtccagacattcccgacgaaatt
ccttgttctttttctgttgtcaacatttccgcgagcgaagattactggagtccggcattg
gatccattcgagaatgatttagaacctactggcgatttgtatcctcataatccgttccgt
ctagatccgagtgcaagcgcaggtgtcctccatccgtccatgatcgttctcttagtagtg
ggcatggctgctcttttagccgcaatggctgttctattgatcaagtggcagcgtcgtcgt
taccgcgactgtccttggaactcgagtcgtggacctcggcagccgcagcaagtctccgtc
ctgaccttcaccaatccgaattactcaccgtcggctcctgacgtcgttgttgcagaaaag
aaagggttctcgtggcaacgatggaaatatgaccgtactcaagaacgtgtgtacgacatg
caggacgagaaacaaagccagacagaagctgcttcgttgattccgcacagtcagccaccg
ccggaagtggaaacggatctggaagctgaaaccgatgtgattgaatcgtcttcgggccca
tcgtctactccgccgccgaccccacctctgcggatggattcgatctgcctacagtga
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