KEGG   Daphnia magna (water flea): 116926163
Entry
116926163         CDS       T07514                                 
Name
(RefSeq) exosome component 10 isoform X1
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116926163
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmk03019]
    116926163
Messenger RNA biogenesis [BR:dmk03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     116926163
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-GeneID: 116926163
NCBI-ProteinID: XP_032788864
LinkDB
Position
LG7:complement(1323871..1326354)
AA seq 555 aa
MKNSPKKKTRQINPGGDNGQSNGCDPVCLQLHLMLKKKKISPKMAGVVKSNSTSKAKIKA
KDKTDIPKPQVNFKEKINNDPQPFLHKLKEKPYSLKPLSFQERDSHPYEFELENFTPDPI
FLDVKNDIPLLPLSKTPLIMIDSTEGFEHLLQDLLLQTVIAVDLEHHDSRSYQGITCLMQ
ISTGKSDYIVDTLKLWDQLQPLNQVFCNPKILKIFQAAENDVVWLQRDFGIYVVNLFDTC
QAASLLGLKRKGLAFLLQHYCQIRISKSYQRADWRIRPLSKEMLNYARGDTHYLIYIYER
LKQDLNSGQFYGKLDGSSIRKEGKEGLLKKCHELKRSKASKTTANDTGVKRMLEVWKNSR
SICLRRYKIPPKEKYLKSYNKLIEKDKNFNRQQLYALQELCAWRDRVARDEDESPNFVVP
NYMLVTMTHHLPNNPQHLLRCCSYAPFVQQHLLHIHGIMLKARELDISSTTTKETRTTSE
TKEQYKKGRKRKSTFSFAETSQRLTKKRAIGDVSSIAKKSVLVTKTHRVELTNLACEKKS
PATTRKEKPSQSQNM
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaaaaacagcccaaaaaaaaaaactcgtcaaattaaccctggtggtgataatggtcag
tccaatggttgcgaccctgtgtgtctgcagctgcacctaatgttaaaaaaaaaaaaaata
tctcccaagatggccggtgttgtgaaaagtaattctacttccaaggcaaaaattaaagca
aaagacaagacagacataccaaaaccacaagtgaattttaaagaaaagattaacaatgat
cctcaaccatttctccataaactgaaggaaaagccgtactccttgaaacccctgtcgttc
caagagcgtgacagccatccctatgaatttgaattggaaaattttacaccagatccgata
tttctggacgtgaaaaatgacatacctcttttgcctctttcaaaaactcctctgatcatg
attgatagcactgaaggatttgaacatcttttacaagatctcttgttgcagacagtaata
gcggtagatcttgagcatcatgattctagatcatatcaagggattacctgtttaatgcaa
atttctactggcaagtcagactacattgttgacactctcaaattgtgggatcagctacaa
ccattaaatcaggtcttctgcaatccaaaaattcttaagatattccaagcagctgaaaat
gatgttgtgtggcttcaacgagattttgggatctatgttgtcaatctttttgacacatgc
caagctgcctctttattggggttgaaaagaaaaggtttggctttccttctacagcattac
tgccaaattcgtatcagcaaatcttaccagcgagctgattggcgaatccgtcctctgtct
aaagaaatgctaaactacgcgcgcggagacacacactacctcatctacatctatgaaaga
ctaaagcaggatcttaactcaggccagttttatggtaagcttgatggtagctccataaga
aaagaaggaaaagaaggattacttaagaaatgtcacgagctaaaaagatccaaggcaagt
aagaccacagctaatgatacgggtgtaaaacgaatgttagaagtttggaagaatagccga
tccatctgtctgaggcgttataagattccaccaaaagaaaaatatttgaaatcatacaat
aaattgatcgaaaaagacaaaaatttcaacagacaacaattatacgccctacaagagctg
tgtgcctggagagatcgcgtagcgcgtgatgaggatgaaagccctaatttcgttgtacca
aattacatgctggtgacaatgactcatcatcttccaaacaatccacagcatttgcttcgc
tgttgctcttatgcaccttttgttcagcagcatttacttcacatacatggaatcatgttg
aaagcaagagaacttgatatttcctccactactacaaaggaaacaaggactacaagcgaa
acaaaagaacagtacaagaaaggcagaaaaaggaagagcacattttcgtttgctgaaacg
tcacaacgtctaacgaagaagcgggcaattggagatgtttcatcaatagcaaagaagtca
gttctggtcacaaagacccacagggtggaattgactaatctggcttgtgaaaagaaaagc
cctgccacaaccaggaaagaaaagcccagtcaaagtcaaaacatgtag

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