Daphnia magna (water flea): 116926163
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Entry
116926163 CDS
T07514
Name
(RefSeq) exosome component 10 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116926163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116926163
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
116926163
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
116926163
NCBI-ProteinID:
XP_032788864
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Position
LG7:complement(1323871..1326354)
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AA seq
555 aa
AA seq
DB search
MKNSPKKKTRQINPGGDNGQSNGCDPVCLQLHLMLKKKKISPKMAGVVKSNSTSKAKIKA
KDKTDIPKPQVNFKEKINNDPQPFLHKLKEKPYSLKPLSFQERDSHPYEFELENFTPDPI
FLDVKNDIPLLPLSKTPLIMIDSTEGFEHLLQDLLLQTVIAVDLEHHDSRSYQGITCLMQ
ISTGKSDYIVDTLKLWDQLQPLNQVFCNPKILKIFQAAENDVVWLQRDFGIYVVNLFDTC
QAASLLGLKRKGLAFLLQHYCQIRISKSYQRADWRIRPLSKEMLNYARGDTHYLIYIYER
LKQDLNSGQFYGKLDGSSIRKEGKEGLLKKCHELKRSKASKTTANDTGVKRMLEVWKNSR
SICLRRYKIPPKEKYLKSYNKLIEKDKNFNRQQLYALQELCAWRDRVARDEDESPNFVVP
NYMLVTMTHHLPNNPQHLLRCCSYAPFVQQHLLHIHGIMLKARELDISSTTTKETRTTSE
TKEQYKKGRKRKSTFSFAETSQRLTKKRAIGDVSSIAKKSVLVTKTHRVELTNLACEKKS
PATTRKEKPSQSQNM
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacagcccaaaaaaaaaaactcgtcaaattaaccctggtggtgataatggtcag
tccaatggttgcgaccctgtgtgtctgcagctgcacctaatgttaaaaaaaaaaaaaata
tctcccaagatggccggtgttgtgaaaagtaattctacttccaaggcaaaaattaaagca
aaagacaagacagacataccaaaaccacaagtgaattttaaagaaaagattaacaatgat
cctcaaccatttctccataaactgaaggaaaagccgtactccttgaaacccctgtcgttc
caagagcgtgacagccatccctatgaatttgaattggaaaattttacaccagatccgata
tttctggacgtgaaaaatgacatacctcttttgcctctttcaaaaactcctctgatcatg
attgatagcactgaaggatttgaacatcttttacaagatctcttgttgcagacagtaata
gcggtagatcttgagcatcatgattctagatcatatcaagggattacctgtttaatgcaa
atttctactggcaagtcagactacattgttgacactctcaaattgtgggatcagctacaa
ccattaaatcaggtcttctgcaatccaaaaattcttaagatattccaagcagctgaaaat
gatgttgtgtggcttcaacgagattttgggatctatgttgtcaatctttttgacacatgc
caagctgcctctttattggggttgaaaagaaaaggtttggctttccttctacagcattac
tgccaaattcgtatcagcaaatcttaccagcgagctgattggcgaatccgtcctctgtct
aaagaaatgctaaactacgcgcgcggagacacacactacctcatctacatctatgaaaga
ctaaagcaggatcttaactcaggccagttttatggtaagcttgatggtagctccataaga
aaagaaggaaaagaaggattacttaagaaatgtcacgagctaaaaagatccaaggcaagt
aagaccacagctaatgatacgggtgtaaaacgaatgttagaagtttggaagaatagccga
tccatctgtctgaggcgttataagattccaccaaaagaaaaatatttgaaatcatacaat
aaattgatcgaaaaagacaaaaatttcaacagacaacaattatacgccctacaagagctg
tgtgcctggagagatcgcgtagcgcgtgatgaggatgaaagccctaatttcgttgtacca
aattacatgctggtgacaatgactcatcatcttccaaacaatccacagcatttgcttcgc
tgttgctcttatgcaccttttgttcagcagcatttacttcacatacatggaatcatgttg
aaagcaagagaacttgatatttcctccactactacaaaggaaacaaggactacaagcgaa
acaaaagaacagtacaagaaaggcagaaaaaggaagagcacattttcgtttgctgaaacg
tcacaacgtctaacgaagaagcgggcaattggagatgtttcatcaatagcaaagaagtca
gttctggtcacaaagacccacagggtggaattgactaatctggcttgtgaaaagaaaagc
cctgccacaaccaggaaagaaaagcccagtcaaagtcaaaacatgtag
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