Daphnia magna (water flea): 116926231
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Entry
116926231 CDS
T07514
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04137
Mitophagy - animal
dmk04140
Autophagy - animal
dmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116926231
04137 Mitophagy - animal
116926231
04148 Efferocytosis
116926231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dmk03000
]
116926231
Transcription factors [BR:
dmk03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
116926231
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
PAS_9
PAS_4
HLH
PAS_2
Motif
Other DBs
NCBI-GeneID:
116926231
NCBI-ProteinID:
XP_045033515
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Position
LG1:complement(17878182..17884374)
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AA seq
887 aa
AA seq
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MATRAPKEKRRNSEKRKEKSREAARCRRSKESEIFTDMANLLPVPASLSSQLDKASIMRL
TIAFLKAQSLLGNSVQELCSMWNEEKCSMADACWPQALGGLLLALSSEGDIIYLTENVTQ
QLGLPQMDLIGQSIYDYCHPCDHDELREVLSLRPDGDLTRSFFLRLKSTITTKGRSNNNL
KAASYKVMNCSGRIVLATASARNTYSQERAFDEEDDLLTEDDLELEAKAPTSHFLVMVGD
PIPHPSNIEMPLDSYTFLTKHTLDMKYTYVDEKIYEFLGYTSEDLEGQSAYQLHHAQDNE
SILKSYKTMFTKGQIQTPPYRFLARHGGYAWVQTQATLVYGNRDSRPQAVVCVHTCLSEI
EDGDQILFASQAESSPISLAHRPLAAAPGPSRKPPTDWVPQNMTSKLFVPKTAEMNEGFL
IFDKQNRATVLKEEPEDLTHLAPVAGDTCIPLDMPSISFPGDIFDVEQLTPEFFDCLPLT
GFDIPLLMESEQWIASDGSGAMESVDFTVPPVIKQEDPFIFFNSETPLPSSSSNMSSPMA
SSSQGNEDYEIDYRIDVASPSFMDETFMACSSLKSSKSPLEDEDELDRRAPYISMNESDD
LPLFDPSELFSGLDLECLPMLPMQKTGSTFTETDQCVLVKLLQQSDLPKLVGGPPKLMEC
RPPVVKESSPLETVAASFLASQQALKRCSLGPADDSNPKRLKAPTLKIPTAGPLATRVVP
LKPSRGATSSLMELLIERPTERSNQSSSVLQNLLVSGHDLRTGHDLQKRRSSSSSCKAVS
STSSCFVSLLPPPQLSLEKVQQPLLKKQLLMEQQDQFYGDRFDSSSDAGSDTDTKVRHPG
AFSSLNNFPFNMEASPCSSVSLDIDAGDFFDTLNMSGEFVATDGATE
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcgcgcaccaaaggaaaagaggcggaattcggaaaagcgcaaggagaaatcc
cgggaagctgcacgttgccgccgaagcaaggaatcggaaatctttaccgatatggccaat
ttacttcctgtgccggccagtctcagctctcaattggataaggcatctatcatgaggctg
accatagcttttctgaaagcacagtctctccttggcaacagtgtccaagaactgtgcagt
atgtggaatgaagaaaaatgttcgatggccgacgcttgttggcctcaagctcttggcggt
ttgttattggctctatcatctgaaggagatatcatctacctgactgaaaacgtaacccag
caactgggtctcccacagatggacctgattgggcaaagcatttacgactattgccacccg
tgcgatcacgatgaactccgtgaagtgctttcccttcgtcctgatggtgatttaacgcgc
tctttttttctccgcctcaagtcaacaataacgaccaaaggacggagtaataataacctg
aaagccgcctcttacaaagttatgaattgttcggggcgcattgtattggcgactgcgagc
gcccgtaatacttattcgcaagagcgagctttcgatgaagaagacgatttactaactgag
gacgatttggaactggaggccaaggctccgactagccactttctcgtcatggtcggcgat
cccataccgcatccatccaacattgaaatgccgttggacagctacactttccttactaag
cacaccttggatatgaagtacacctatgtcgatgaaaagatttacgagtttttgggatac
acgtcagaggatttggaaggtcagtcggcgtatcagctacaccatgcgcaagacaacgaa
tctatactcaagagctacaaaacgatgtttaccaaagggcaaatccaaacccctccttat
agattcttggcaaggcatggaggttatgcttgggtccagacccaagccacgctcgtgtat
ggcaaccgagattcgaggccacaagccgttgtatgtgtccatacttgtcttagcgaaatt
gaggatggagatcaaatcctattcgctagccaagctgaatcgtcacctattagtcttgcc
caccgaccgctggctgctgctcctggaccgtcaaggaagccgcccactgattgggtgcca
cagaatatgacttctaagctatttgtacctaagactgctgaaatgaacgaaggattcttg
atcttcgacaagcaaaatcgcgcgactgtcctgaaagaggagccagaggacttgacgcac
ttagccccggtcgctggggacacgtgcatcccattggacatgccgtccatcagtttccca
ggcgacattttcgatgttgagcaactgacgcccgagtttttcgattgtctgcctctaacc
ggttttgatatccccttgctgatggaatctgagcaatggatcgctagcgatggcagtggt
gcaatggagtcggtcgattttaccgtccctcccgttatcaagcaagaagatccatttatt
tttttcaatagcgaaactcctctgccgagtagctcgtctaatatgtcgtcgcccatggca
tccagctcacagggcaatgaagattatgaaatagattatcgtatcgatgttgccagtcca
tcattcatggacgaaacttttatggcatgctcatcattgaagagctcgaaatctcctttg
gaagatgaagatgaattggatcgaagagctccttacatatcgatgaacgaaagcgacgat
ttgccgctatttgatccatctgagctttttagtggtttggatttggaatgcttgccaatg
ctacctatgcagaaaactggttcgacattcaccgaaacggatcaatgtgttctcgtcaag
ctgttacaacaaagtgatctgccaaaactagttggaggaccgccaaaattaatggaatgc
cgtccgccagttgtaaaggaaagtagtcctctagagacagtggctgcgtcctttttggct
tcacaacaagcactcaagcgctgtagtctgggcccggctgatgattcgaatcccaagcga
ttgaaagcgccgacattgaaaattcctacagctgggccgttggcaacccgcgtggtacca
ttgaagccatcgagaggcgccacatccagtttaatggaattgctcattgagaggcccacg
gagcggagcaatcaatcatccagcgttcttcaaaacttactggtcagtggtcatgacttg
cgcacgggtcacgatctgcagaagagacgctcttcttcctcctcatgcaaagctgtctct
tcgacttcttcttgctttgtttctcttcttcctcctcctcagctttctttggaaaaggtt
cagcaaccacttctaaagaagcaactgctgatggagcagcaggaccagttttacggtgat
cggttcgactcgtctagtgacgcgggaagcgatacagacacgaaagttcgtcatccggga
gcgttcagttcgttgaataatttcccctttaatatggaggcgtccccctgctcttccgta
tcgctcgatattgacgcaggcgatttctttgacacgcttaacatgtccggtgaatttgtg
gccacggacggtgcaaccgagtga
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