Daphnia magna (water flea): 116926644
Help
Entry
116926644 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIP12
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116926644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmk04121
]
116926644
Enzymes [BR:
dmk01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
116926644
Ubiquitin system [BR:
dmk04121
]
Ubiquitin ligases (E3)
HECT type E3
116926644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WWE
Arm
ARM_ARMC5
WWE_5
Motif
Other DBs
NCBI-GeneID:
116926644
NCBI-ProteinID:
XP_045034971
LinkDB
All DBs
Position
LG1:2981042..2993158
Genome browser
AA seq
2250 aa
AA seq
DB search
MASSAPPAGPANSGGGDQESNHSPSSSNSPVSSTQTETPIVSRLSYSAPAKNSEGSEGPI
SSRLRRLPGRYLSTSHLPVATPPTPLDSRRNLGGTQKHQRQSLPLPGSTGVDRNHAKTPY
ERRSPSIPTPKSVFHQPPTPADTPVTPAVLSPTAIDSCSAGNRGVTPPIRQRKRTRTNES
VEAGPSSSAVGSTTPSTSRTRYCQPAVNGGNGSPHRSPTKKVRLQTGKEAFQSAISPPQQ
LHSRANIGAGHSHCLGGSTSAGVAGGDAEVTAGEGEQQQQRLSQIRHPRQPTNTGSCASN
SSRRASRSGKVPLSTSGSGASGVGGGGGGDTSGIPGVGGVGAPASAANNTGAVAGSAGLL
GVGAGAVMDGGTHSGSSSASGSHTPASSSSSSSAPAPVGGANAVPPDGASGLLNLPPGHA
ANLLLGAGGATGTGDSESDDSEMGRLQALLEARGLPPHLFGALAPRMQHILHRSMGSNST
ISKAQQLIAAVQNNADESQQLQAAIEMCQLLVMGNEDTLAGFPVRQAVPALIHLLHMEHN
FDMMNHACRALTYMMEALPRSSAVVVDAVPAFLEKLQVIQCMDVAEQSLTALEMLSRRHA
KSILQARGVSACLMYLDFFGINAQRAALSITANCCQNLHPDELHFVSGSLPALAARLTQH
DKKSVESICIAFSRLVDSFHGESDRLQEIASTELLAHLQQLLVIVPPVLSSATFIMVVRM
LSIMCAHCPELAVKLLKQNIAHTLCLLLTGPAGAVASGTSSSTAETLPASSTSSPAKEHH
QQDHAVELVARSPQELYEITSLIGELMPRLPTDGFFAVDVWLTKPSTVHYDAVQWQWRDD
RGSWHAYSAIDSRMVEAAHQSGEDEISLSTMGRTYTLDFHSMQQINEETGTTRPVQRKIN
NTGGSSGLGGGNGGLGVKQSDSRIECLQEETELATQFIRSLFSLLYEVYSSSAGPAVRHK
CLRALLRMLYYASPELLRDVLKSQSVASHLAGMLSSQDLKIVVGATQMAHILMQKLPDVF
GVHFRREGVMHQVQRLVAEPAESPSSSATTPAAVLAAPFENDILNRSATYSSSTTDQCPL
GNGSSGSSGAPLVASSPERAAAVGTTAATSSEVGESPVTLTNPIMAVSAVASSPMKLSDV
LKRKRGAKRGAVGARKSRNYAEETSSGGPPSYSMDGHDYLKSGASASSSSSAGSVGGARS
KFGFTMAAHGSGGASNNGTPTSAISGSAAKATSFLANLNPARWGRSHHNNQSSSTGNSGT
SSAACTSSSPSLLPNVPKSLSNPQLAGNREKVKTWIRDQATLFLSTYFSPAATEAGESGH
GQSGEGSGVNTTGLSVLSELTRLVQRLETEPLMAKETLEQIRAIVADSDVSSFEILHSGL
VQSLLKYLTADGIDRDDRLRLFLQEFLRVSPNSEFPTSEAATHLLALTHKLSGCINQLEQ
FPVRVHDLPAPAGTSGASGGYFRSGTSALRFFNTHQLKCNLQRHPSCNNVKQWKGGTVKI
DPLALVQAIEKYLVIRGYGRIRDKDLADSDDDNSEDDVDDSLATVLMNQGNSVRHKLQFL
VNDHVIPYNMTVYQAIRQFSMDQSETDTDSETPMGHASIWVQTHTIFYRPVPDNDPCNYA
SPNAAKNTSAPNVLLPCGSASGTRKGKGANGKSSNKKKGDDLWIDGIAPDVNSPIVPFLT
MRMPEYVTVDDPSLEVLNLLRVVHSLNRYWGFLYHLVDYKPILSIHELINSKLTAKANRQ
LQDPLVIMTGNLPPWLAQIATACPFLFPFETRHLLFYATAFDRDRALQRLMDSAPELMSG
GDSSERVTPRLDRRKRTVSREDILKQAEQVMQDMASSRALLEIQYENEVGTGLGPTLEFY
ALVSRELQRFDLELWRGEAVSATLVAGGGSLGSSPSSSSSEEPSKTKTGPVSTVGSIGTS
VDYVHNQYGLFPSPCSRSLKAGPLAKIRSKFRFVGKFIAKAIMDSRMLDLPFSPVFFRWL
LGQERFLTASDMVLLDPILAKTYKSLMALVEEKKRIDQDSTLTPAQRQAAIQALNLDGCP
VVDLGLDFTLPGSSTIELRKGGKDQPVTINNLEQYLKLLSHWILVEGVSRQMESLREGFE
SVFPLHHLSLFYPEEMDLLLCGASQWTTEGAWEVQSLLDAWKPDHGFTLESKAIRNLAEI
LSSYNKEEQRLFLQFVSGSPRLPVGGFKSLSPPLTVVRKTLEPNQSPDDFLPSVMTCVNY
LKLPDYSSLEIMRQKLSVAVREGQHSFHLS
NT seq
6753 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcagcaccacctgcaggtccggctaattctggtggtggtgatcaggaatca
aaccactcacctagcagctccaactctccagtatcatccacacagactgaaactcctata
gtttccagactgagctatagcgctcctgccaaaaacagtgagggctctgaaggtcctata
tcttccagattgagacgtctaccaggaagatacctttcgacatctcatttaccagttgcc
acaccacctacacctttggattccagaaggaacttgggtggtacacaaaagcaccagaga
caaagtctacctctaccaggtagcactggcgtggatagaaatcacgctaagacgccctat
gagcggagaagccctagtattccaaccccaaaatctgtctttcatcaacccccaacacca
gcagatacaccagttacgccagcagttctcagtccaacggcaatagatagctgttcggct
ggaaatagaggtgtcacaccgccaataagacaacgtaaacggacgagaactaacgaatcg
gtagaagcgggaccttcctcttccgcagtaggatccacaactccgtctactagtcgaacc
cgttactgccagccggccgttaacggtggtaacggtagcccccatcgcagtccgaccaag
aaggttaggctgcaaacgggcaaagaagctttccaatcagccatatcaccaccacaacag
cttcattcacgagcaaacataggggctggacacagtcattgtttgggagggtcgacgtcg
gctggcgtagcaggaggagacgctgaggtcacagccggagaaggagaacagcaacaacag
cgcttgtctcaaatacgtcacccgcgacaaccgaccaacacggggtcctgcgccagcaac
agtagccggcgagcctcgaggtccggcaaagtgccactcagtactagcggaagtggtgcc
agcggagtaggaggcggtggcggcggtgataccagcggaatcccgggtgtcggcggcgtc
ggcgcacctgcgtcggccgccaacaacaccggagcagttgcaggatcagccggattgctt
ggagtgggcgctggcgctgtgatggatggcggaactcatagtggatcttcatcggctagt
ggttcgcatactccggcttcttcctcgtcttcttcgtcggcacctgcaccagttggtgga
gccaatgccgttcctcctgacggagcttccggcctgttgaacttaccaccaggtcacgct
gctaatcttctcttaggagcagggggagccactggaactggcgattccgaaagtgacgat
agcgaaatgggacgactccaggcgttgctggaagctcgcggacttccgccgcatctgttt
ggcgccctggcgcctcgaatgcagcacatacttcatcgttccatgggatccaattcaact
atctccaaagctcaacagctgattgccgccgtgcaaaacaacgcggacgaaagtcaacag
ctgcaggcggctattgaaatgtgccagctgttggtgatgggcaatgaagacactctggcc
gggtttcccgtccggcaagctgtccccgccctcatccatttactgcatatggaacacaat
ttcgacatgatgaatcatgcctgtcgggcattgacttacatgatggaggcgcttcctcgt
tcttcggctgtcgtcgttgatgctgtgccggctttcctcgagaaattgcaggtcatccag
tgcatggatgtggccgagcagagtctgacagctctggaaatgctgtcacgtcggcacgct
aagtcaattttgcaggcccgtggcgtttccgcgtgcctgatgtacctggatttctttggc
attaatgcccagcgagccgccctttccatcacggccaattgttgccaaaaccttcatccg
gacgagttgcatttcgtttcgggatccttgccggcccttgccgcccgtcttacccaacac
gacaagaagagcgtcgagagtatctgcatcgcctttagtcgcctggtcgacagcttccac
ggtgaatccgatcgactgcaagagattgccagtacggaattgctggcacacttgcaacag
ttgctcgtcatcgtgccgcccgtcctctctagcgcaacattcatcatggtcgtgcgaatg
ctctccataatgtgcgcccactgtccggaactggccgtcaagcttctcaaacagaatatt
gcacacacgttgtgcctgctgctgactggacctgcgggcgcggttgctagtggcacttca
tcttccaccgctgaaactttgcccgcttcttcgacgtcatcgccagccaaagagcaccac
caacaggatcatgcggtggaattggtggctcgcagtccgcaagaattgtacgagataacg
tcgctgattggcgaactgatgccacgtctgccgacggatggtttcttcgccgtggatgtt
tggctcaccaaacccagtaccgtccattacgacgcggtccagtggcaatggcgtgatgac
cgcggctcatggcacgcgtattcggccatagattcacggatggtcgaagccgcacaccaa
tccggcgaggatgagattagtctttccaccatgggtcggacgtacacgctggattttcat
tctatgcagcaaataaacgaagagactggcaccacgcgacctgtccagcgtaaaataaac
aatactggcggttccagcggattaggcggaggcaacggtggcctcggtgtaaagcagagt
gattcaagaatcgaatgtttgcaagaagaaacagaattggcaacacagttcattcgctcc
ctcttttctcttctttacgaagtgtatagcagctcagctggaccggctgttcgtcacaag
tgcctgcgcgccttattgcggatgctttattacgcctcgcccgaacttctacgggatgtc
ttgaaaagccagagcgttgccagtcatttggccggtatgctttcgtcgcaggatctcaag
atcgtcgtcggcgccacgcaaatggcccacattctcatgcaaaaattgccggacgtcttt
ggtgttcactttaggcgtgagggagtcatgcatcaagtccagcgactagtggccgagcca
gcagagtcgccctcgtcctccgcaacaacacccgccgccgtcctcgctgccccatttgag
aatgacattttgaaccgatcggccacgtattcttcgtcgacaacagaccaatgcccgtta
ggaaatggatccagcggctcaagtggggccccactcgttgctagcagcccggaacgtgct
gccgccgttggcacgactgcggccactagttcggaggtcggagaatcgccggtgacgtta
acgaatcccattatggccgtctcagctgtagcgtctagcccgatgaaactgagtgacgtt
ttaaagaggaagcggggggcgaaacgtggtgctgtcggtgcccgtaaatcaaggaactat
gcagaagagacatcttcaggtgggccgcccagctacagcatggacggacatgactatttg
aaaagtggtgctagtgccagcagcagtagtagtgccggaagcgttggaggagctcgctcc
aagttcggtttcaccatggccgctcacggtagtggtggggcgagcaataatggtacacct
acatcagccatcagcggaagcgctgcgaaagcgacaagcttcctcgccaacctgaatcct
gcacgttggggacgttctcatcataataatcagtcatcgagcaccggcaattcgggcacg
tccagtgcagcttgtacctcttcgtctcccagcctcttgccgaacgtgcccaaatcgctg
agcaatccacagttggctggaaatcgagaaaaggtcaagacatggatacgtgatcaagcc
actctcttcctatcaacctatttcagcccggctgcaacggaggctggcgagtcgggccac
ggtcagtccggtgaaggatcgggtgtaaacactactggtctcagtgtcttgtcggagttg
acgcgtctagttcaacgactcgaaaccgaaccgttaatggccaaagagactttagagcag
atccgtgcaatcgttgcagattcggacgtttcctcgtttgaaattcttcacagtggattg
gtccagtctcttctcaaatacctcactgcggatggcattgatcgcgacgatcgattgcgg
ctcttccttcaggaatttcttcgtgtgtcaccaaacagcgaattccctacatcagaggcg
gccactcatttattggcgttgacgcacaaattgagcggctgtattaatcagctggaacag
ttccccgttcgggtgcatgatttgcccgcccctgccggcacgtcgggcgcttcgggtggc
tatttccgttcagggacctcggcgttgcgcttcttcaatacgcaccagctcaagtgcaac
ttacagcggcatccatcgtgcaacaatgtgaaacaatggaaaggcggtaccgtcaaaatt
gacccgcttgctctggtgcaggccattgaaaaatacctggtcatccgcggctatggccgc
atccgagacaaagacctggcagatagcgatgacgataatagcgaggatgacgtcgatgac
agtttggcgaccgttttaatgaaccaaggaaatagcgttcgacacaagctccaatttttg
gtcaacgatcacgtgatcccttacaatatgacagtctaccaggctatccgacaattcagc
atggatcaatccgagacggatacggattccgaaaccccaatggggcacgcatccatttgg
gtacagacgcacaccattttctaccgaccagtgcctgataacgacccgtgcaactatgcc
agtccgaatgctgccaaaaatacgagtgcaccaaacgtactgctgccgtgcggatctgct
tcagggactcgtaagggcaaaggcgccaatggcaaaagctcgaacaaaaagaaaggcgac
gacctgtggattgatggaattgcccccgatgtgaattccccaatagtgccatttttgacc
atgcgaatgcccgaatacgtgacggtcgatgacccatcgctggaagtgctgaatctgttg
cgcgttgtccactccctaaaccgctattggggatttctttatcacctggtcgactacaag
cccattttgtcgattcatgagctgatcaactctaagcttactgccaaagctaatcgtcaa
ctgcaggacccactagtgataatgacgggaaacttgccaccgtggctggcacaaatcgcc
acggcatgcccgttcctgtttccttttgaaacccggcacctgctgttttatgctacggca
ttcgaccgtgaccgagcgctccagcgcctaatggactctgctcctgaattgatgagtggt
ggtgacagtagtgagcgtgtcacaccccggcttgatagacggaaacgcacggtgtcgcgt
gaagacattttgaagcaggcagagcaagtcatgcaggacatggcttcgtcgagagccctt
ctcgaaatacaatacgaaaatgaggttggaactggacttggaccgacgcttgagttttac
gccttagtatcgcgagaattgcagcgctttgatctggaactttggcgcggagaagctgta
tcggctaccttagtcgctggcggcggatcacttggatcgtcaccctcgtcttcgtcgtcg
gaagaaccatccaaaacaaaaacaggccccgtttctaccgtcggatccatcgggacgtca
gttgattacgttcacaatcaatatggcctctttccgtcgccctgctcgcgcagtctcaag
gccggcccactggccaaaattcgctcgaaattccgctttgttgggaaatttatagcgaaa
gcgatcatggattccaggatgttggatttgccatttagcccggtgtttttccgctggctg
cttggtcaagaaagattcttgacagcatcagacatggtcttgttggatcccattttggcg
aaaacgtacaagtcattgatggctctagtagaagagaaaaaacgtatcgatcaggactcg
actctcacgccagcccaacgacaggcagcaatccaggcgctcaatctcgacggctgtccc
gtcgtcgatctcggcctggactttacgcttcctggctcgtccaccatcgaactgcgaaag
ggaggcaaggatcagcccgtcaccatcaacaatttggagcaatacctcaagttactttca
cactggatccttgtcgaaggcgtctccagacaaatggaatctttacgcgaaggattcgaa
tccgttttccccctacatcatctttctcttttctatccggaagaaatggatcttcttctc
tgcggagcttctcagtggactactgaaggtgcttgggaagtgcaaagtttgttggacgct
tggaagccagaccacggcttcacattggaatcaaaagcgatacgaaatctggccgaaatt
ctctcgtcctacaacaaggaagagcaacgccttttcctgcaatttgtctcaggatcccct
cgtctcccggtcggaggtttcaaaagtttgtctcctccattgacggtggtacggaaaaca
ttagagccaaaccagagtccggatgatttccttccgtctgtgatgacgtgcgtcaactat
cttaaacttcctgactacagtagtctggagattatgcgtcaaaagctatctgtcgcagta
cgtgagggccagcattcgtttcatctctcttaa
DBGET
integrated database retrieval system
