Daphnia magna (water flea): 116927424
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Entry
116927424 CDS
T07514
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116927424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116927424
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116927424
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116927424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
116927424
NCBI-ProteinID:
XP_032790332
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Position
LG7:complement(9985166..9989114)
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AA seq
737 aa
AA seq
DB search
MAATRKLQGEIDRCLKKVTEGVELFEDIWQKVHNAANSNQKEKYETDLKKEIKKLQRLRD
QIKSWIQSAEIKDKSQLVENRKLIETQMERFKIVERETKTKAYSKEGLGAAQKLDPAQKE
REDISQWLNTSIENLNIQIDQFECEIESLLAAKKKKLDKDKQERLDKLKEFLERHRFHIR
KLETLLRMLDNLTVEVSQIKKIKDDIEYYIEAASTDPDFEENTYLYDDINFLDEFADVVG
TVGGDGSHEEGSPSSPGTAPSPTSSPAMNHQGSGTNTTPSSTGTGAPATTPNDADERQKR
THRSSTDDSHPPKTPSQVAPVKPAPIKAPTKTVLTTPIKSSAAAVSHSTPNNSSPSSGST
MSNHISTPSTPQVNGAALAYSVVTREDGIQSLSLGNSNNSSGHADSSPISQQQSPAVTST
AQAPAPPQPQQQQPTAVPVVVPSKLISSTSVDSTGTVASSISTAPSPLPSAATPPSSSAA
TSSLPLVNGPSNKSGAESISLRAMAQHAVDQQVIQPAAPTSDPTANLLYSENNTNNNNNN
NPGVVGSGRTVGTTSGQLSVPSSLVPQPPAPTGEAHIPPLLGVAPLGPVALSKEQQIQHQ
SLEAAFYHMPHPSDSERLRHYLPRSPYMTPPYYPQSVPLASDSLDFFHRLSTETLFFIFY
YLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITEEYEQGTYIYFDYEKWGQRK
KEGFTFEYRFLEDRDLN
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaacgagaaaattgcaaggtgaaattgaccgctgtttgaaaaaagtaacagaa
ggtgttgagctatttgaggacatttggcaaaaggttcacaatgcagcaaatagcaatcaa
aaagaaaagtatgaaactgatcttaagaaggagatcaaaaagcttcaaaggcttcgagac
cagatcaaatcctggatccagtctgctgagatcaaagacaaaagccagcttgtggaaaac
agaaagctcattgaaactcaaatggagaggttcaaaattgttgaacgagaaacaaagacg
aaagcatattccaaggaaggcctgggtgcagctcaaaaattggatcctgcccagaaagaa
agagaagacattagtcagtggcttaatacttccatcgaaaacctcaacattcaaattgac
cagtttgaatgtgagattgagtctctgttagcagccaagaagaaaaaattggacaaagac
aagcaagaacgattagacaagcttaaggaatttctggaaaggcatcgatttcacatacgc
aaactggaaactctattgcgaatgctagacaatttgacagttgaagtcagccagatcaag
aaaatcaaggatgacattgagtattacattgaagctgcctcgacggacccggatttcgaa
gagaatacgtacctttatgatgatatcaatttcttggacgaatttgcggatgttgtcggt
acagttggaggtgatggaagtcacgaagaaggcagtccttcttcaccaggtactgctcca
tcaccaacgtcatctcctgccatgaaccaccaaggctcaggaaccaatactactccatct
agtacggggacgggggcaccagcaacaaccccaaatgatgcggacgagagacagaaacgg
acgcatcggtcttctacggatgattcacatccacccaaaacgccctcacaggttgcacct
gttaaacctgcccctatcaaagcgccgacgaaaactgtccttaccacaccaatcaaatcc
tcggcagcggcagtatctcattcgacaccgaacaacagctcaccgagttcaggatcgaca
atgtccaaccacatttcgacaccctcgacccctcaagtgaatggcgctgcattagcttac
agcgtcgtgacaagagaagatggtatccagtctctatcgctcggcaattccaataacagt
tcaggccacgccgattcgtcacccatctcgcagcaacaatcaccagcggtgacatctacg
gcgcaagctcctgcgccaccacaaccccaacagcagcaaccgacggcggttcctgtcgtg
gtcccgtccaagttgatttcgtctacttcggtcgattcgactggaacagtggcatcgtca
attagcaccgcaccgtcccctcttccttctgctgccacgccaccttctagttctgctgcc
acatcttccctacccttagtcaacggcccctcgaacaaatcaggagccgagtctatctca
ttgcgagctatggcgcagcatgcggtggaccagcaggtcatccagccagccgctccaacc
agtgatccaacggcaaaccttctttactcggaaaataacaccaataataacaacaacaac
aaccctggtgttgttggtagtggtagaacagtagggacaacttctggacagctttctgtg
cccagcagcctagttccgcagccgcccgcgcccacaggcgaagctcacattccgcctttg
ctcggtgtcgccccactcggcccagtggcgctcagtaaagaacagcagattcagcaccag
tcgctggaagccgcattttatcacatgccgcacccatcagactccgaacgtttgcggcat
tacctcccgagatcaccttacatgacgccaccttactatccacaatcggtacccttggct
tctgattcgctggattttttccatcggctctcgacggagacgctcttcttcattttttac
tacctggaagggactaaagcccaatacctggccgctaaggcactgaagaagcaatcctgg
aggtttcataccaaatacatgatgtggttccaaaggcacgaagaacctaagactattacc
gaggagtatgaacagggcacttatatctactttgactacgaaaagtggggccagagaaag
aaggaaggcttcacgttcgagtacagatttctcgaagatcgagatctcaactag
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