Daphnia magna (water flea): 116927456
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Entry
116927456 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03440
Homologous recombination
dmk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116927456
03450 Non-homologous end-joining
116927456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmk03032
]
116927456
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116927456
DNA replication proteins [BR:
dmk03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
116927456
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
116927456
BRCA1-C complex
116927456
NHEJ (non-homologous end-joining)
MRX complex
116927456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SMC_N
AAA_21
SbcC_Walker_B
Rad50_zn_hook
AAA_29
She9_MDM33
YwqH-like
DUF5063
Cyclase
AAA_16
Motif
Other DBs
NCBI-GeneID:
116927456
NCBI-ProteinID:
XP_032790381
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Position
LG7:2567606..2574947
Genome browser
AA seq
1335 aa
AA seq
DB search
MSRIDQLSIQGIRNFSSENAEVIRFEPPVTLILGKNGSGKTTIIESLKYATTGEMPAGTN
RGQSFIHDPKLSTKKMSIGCVKLQFFDEHNNKFIVTRSMEARILKSKLDFKTIDGTISKV
QSDGTLKSHKNKNNDLNTFVCNTLGVSKALLNNVLFCHQEDSNWPLDEAKKVKDKFDDIF
NTTRYVKCQDEIRKQIIEVKAKMKDIEKMVDRYKMQKDQAEEFQNDQRRQTERKANLEAE
MQQLQQNKAELEAKLKQLKDQYKEAERMKGEIQKKKTRMEELERNRHDLESDITRVIAAS
VEELELEIRRFQMTKGDREKELNILHRELQQVDQEGKANAAAQQEQLVQLGKLQSEEEQH
NSRIKQRDTLLINLAHRYKWDKDSAPFPSNEPLNTVQVSRYKSLLKQTVEQEKQKESVLK
QELDVEERNLLNSLNKLREGCVRLEQDIKTKESSLSSFQREVSEIEAKLGAMEENSRQVN
LLERQQVDAQALVDRAKRELNEAELIRDIDRAKSEKMIQEAELDHLRSQLKKVMSQRDIR
VKLDMHQKDLSGKKTQERRLMSRETVEDAIKILVGDNGNKDNLLSYYNGRLNSITTSLSK
KQQSLTKLGQEGATCQANLKNFRNQLEAKQNELAAYQQKLKDAGSSGAAELESDISRLAL
EIQDLDDQRGLVHGSEKMYHHFIDKMEKQRAHSDCPLCHREFDDSDEAQMLKDEMKNRVE
AMPAKKADLDRKIVEKKNKHGQLLQLRPVAQSVAKLTEVEIPRLQTGLQDLESRSNTIQA
ELRDLEESIEFLKNEEDIGKKAHPDIIQLDALKNDIKKLQSQVDSIQAQLGLSGSEGDLT
VEEVQEQVEKAEATYRSTTQSIESMNERYNEHQSKLTQLQKNVNGLMERKLQLNNNLQQR
GNLLERKGTLETDIEQALFDIEEWKQKLEPMVAKQLAAQAAHSDAQKRRSALTEQARSKI
EELLNQLRGLASLDKEIEKWGADGKVAQLRHSQQEVDRLKTEKLALEQRKKEIQEKIKKL
ELALSNCENEERNLRNNLKLIVNTTDREVVKQELEDFNSKLETFKLPQLIKEIQRLEGQL
ESCKIKLGELGGTFQEIQKSIRELEVKLQREEFATAEERYLDQVKDYEVHQAISEDLGNF
YNALESALMKFHKERMSVINRMVREMWHSTYKGKDIDYVEIRAEESAGTSGNTRRQYNYR
VVMVKNGVEMDMRGRCSAGQKVLASLIIRMALAEAFSSKCGVLALDEPTTNLDEDNIASL
SDTILELSNAITRQKRKFQLIVITHDEKFLERMSRDKRMERFYRVDRNRFNMSEIRQFDV
MGGSQSTNIAKKMLK
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagaatcgatcagctttccattcagggtattcggaatttttcttcggaaaatgct
gaggtcatcagatttgagccacctgtaacattaattctagggaaaaatggcagtggcaag
acaacaataattgagtctctcaagtatgctacaacaggagaaatgccagctggaactaat
aggggacaatcatttattcatgatcctaaactatcaacaaagaaaatgtccatagggtgt
gtgaagttgcagttttttgatgagcacaacaacaaattcattgtcacacgttcaatggaa
gcaagaatactgaaatccaaattggacttcaaaacaatagatggaactatctctaaagtc
cagtctgatggaacgctcaagagccacaagaataaaaacaatgacttgaacacttttgtc
tgcaacacattaggtgtttctaaagcactgttaaacaatgtgttgttttgccatcaagaa
gactcaaattggccattggatgaagcaaaaaaagtaaaggacaaatttgatgatatattc
aacaccacaaggtatgtcaaatgccaggatgaaataaggaaacagataattgaagtcaaa
gctaaaatgaaggatattgaaaaaatggttgatcgttataaaatgcaaaaagaccaagca
gaagaatttcagaatgatcaacgccgccaaactgagcgcaaagcaaacttagaagctgag
atgcaacaattacagcagaacaaagctgagcttgaagccaagttgaagcagttgaaggac
cagtataaggaagctgaaaggatgaagggggaaattcagaaaaagaaaactcgtatggaa
gagttggaacgtaatcggcatgacttggaatccgatattacgcgagttattgcagccagt
gttgaagaattggaactcgaaattcgacgtttccagatgaccaagggtgatcgcgaaaaa
gaactcaatattcttcatagagagctgcagcaggtggatcaagaaggaaaagcaaatgct
gcagcgcaacaagagcagctagtgcaattgggcaagctgcaatccgaagaagagcagcat
aacagtcgtattaagcaacgtgacactcttctcattaacttggctcatcgttacaaatgg
gacaaagacagtgctccattcccgtcgaatgaaccgcttaacaccgttcaagtttctcgt
tataaaagtcttctgaagcaaactgttgagcaagaaaagcaaaaagaatccgtcttgaaa
caggagttggacgttgaagaaaggaaccttctcaattctctaaacaaattgcgggaagga
tgcgttcgtcttgaacaagatattaaaacgaaagaaagttcactaagttcttttcaaaga
gaagtgtctgagatagaagcaaaattgggtgccatggaagagaatagtcgtcaagtgaat
ctactggaacgtcaacaagtggatgcacaggctttagttgaccgtgcaaaaagagagtta
aacgaagccgaactgattcgtgacattgacagagccaaatccgaaaaaatgatacaagaa
gctgaactagaccatttacggtcgcagctgaaaaaagtcatgagccaaagagatattcgt
gttaaactggatatgcatcaaaaagatctgtctggtaaaaagactcaggagcgtcgactg
atgtctcgagagacggtagaagacgccatcaagattctcgttggcgataatggaaataag
gacaatctcctttcgtactataatggtcgtctgaattccataactacttcactttcaaaa
aaacagcagagtttgactaaactgggtcaagaaggggcaacctgccaagccaacttgaaa
aattttcgcaatcagttggaagccaaacaaaatgagttggccgcctaccaacaaaaacta
aaggacgccgggagttctggcgctgccgagctggaaagtgatatttctcgattagctcta
gaaatccaagaccttgacgaccagcgtggattagttcacggctctgaaaagatgtaccat
cactttattgataaaatggaaaagcaacgggctcactcagattgtcctctttgccatcgt
gaatttgacgattcagatgaagctcaaatgctgaaagacgaaatgaaaaaccgagtggaa
gctatgcctgctaagaaagcggatttagatcgcaaaattgtcgagaaaaaaaataaacat
gggcagctattacagttacgtccggttgcccaatctgttgccaaactaacggaagtagaa
atccctcggcttcaaactggattgcaagatctcgaaagtcgctccaacacaattcaagcc
gaattgagagatttggaagagtctattgaattcctaaaaaatgaagaagatattgggaaa
aaagctcatcctgatattatccagcttgacgcactgaaaaatgacattaagaagttgcag
tctcaagttgacagtatccaggctcaacttggtctttctggcagtgaaggtgatttgacc
gtcgaagaagtccaggaacaggtagaaaaggccgaagcgacataccgatcaacaacgcaa
agtatcgaatcgatgaacgaacgttacaacgagcatcaaagcaaattaacgcagctgcag
aaaaatgtgaatggcctcatggagcgcaaacttcagttgaacaataatttgcaacaaaga
ggcaatttgctggagcgcaaaggtactttagagacagatatcgagcaggctcttttcgat
atcgaagaatggaaacaaaaattagagccaatggtggcgaaacaattggcggcccaagct
gcgcattctgacgctcagaaaagacgaagtgcgctaacagaacaagcaaggagcaagatt
gaagaattgttaaatcagcttcgtggtttagccagtttggacaaagaaatcgaaaagtgg
ggtgctgacggcaaagttgctcaactgagacacagccagcaagaggtggaccggttgaaa
acggaaaaattggcgcttgaacaacgaaaaaaagaaattcaagaaaaaatcaagaaatta
gaattggctctaagtaactgcgaaaatgaagagagaaacttgcgaaacaatctcaagtta
attgtcaataccaccgatagggaggttgttaagcaagaacttgaagatttcaattctaaa
ttagagactttcaaattaccacaactgatcaaagaaattcaaagacttgaagggcaacta
gaaagttgcaagatcaaattaggcgaactaggtggaacatttcaagaaattcagaaaagc
atccgtgagcttgaagtgaaattgcaacgagaagagtttgctacggcggaggagcggtat
ttggaccaggtcaaagattatgaagtgcaccaggccatcagtgaggatctagggaacttt
tataatgcgctcgagtctgccctcatgaaatttcataaggagaggatgagcgtcattaat
agaatggttcgtgaaatgtggcattctacttacaagggcaaggatatcgattacgtcgaa
atccgtgcagaagagtcggcaggaacgagtggcaatacgcgtcgccaatataattaccga
gttgtcatggtaaaaaatggggtcgaaatggacatgaggggaagatgcagtgccggacaa
aaggttttggcctcgctgatcattcgcatggcactggcagaggcatttagttccaaatgc
ggtgtcttagctttggatgagcctaccacaaatttggatgaagataacattgccagttta
agcgataccattttggagctgtcgaacgcaatcacacgccagaagcgaaaattccaactc
attgttattacgcatgatgagaaatttttggaacgaatgtctcgcgataaaaggatggaa
agattttatcgagtggatcgcaatcgatttaatatgtcggaaataaggcagtttgacgtc
atgggtggatcgcaatcaacaaacatagcgaagaaaatgctgaaatag
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integrated database retrieval system
