Daphnia magna (water flea): 116927887
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Entry
116927887 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: chromatin assembly factor 1 p55 subunit
KO
K10752
histone-binding protein RBBP4
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03082
ATP-dependent chromatin remodeling
dmk03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116927887
03083 Polycomb repressive complex
116927887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
116927887
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
116927887
Histone modification proteins
HAT complexes
HATB complex
116927887
HDAC complexes
Sin3A-HDAC complex
116927887
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
116927887
PRC2.2
116927887
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
116927887
Heterochromatin formation proteins
Other heterochromatin formation proteins
116927887
Chromatin remodeling factors
NuRD complex
116927887
NuRF complex
116927887
NuRF complex (fruit fly)
116927887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
WD40_WDHD1_1st
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_DCAF12
ANAPC4_WD40
Beta-prop_RIG_1st
eIF2A
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
NBCH_WD40
MIOS_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
116927887
NCBI-ProteinID:
XP_032790818
LinkDB
All DBs
Position
LG7:2319202..2321191
Genome browser
AA seq
428 aa
AA seq
DB search
MMADKDGEPFDEAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEG
KDYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNDKGEFGGFGSVSGKIEIE
IKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSRPDPSGECHPDLRLRGHQK
EGYGLSWNPNLNGHLLSASDDHTICLWDINASPRENRVLDAKTVFTGHTAVVEDVAWHLL
HESLFGSVADDQKLMIWDTRSNNTSRPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTV
ALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTED
AEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEEPETPA
SELETPTN
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagataaggatggagagccgtttgatgaagcagtggaggaacgcgtcatcaac
gaggaatacaaaatctggaagaagaataccccttttctgtatgatttggttatgacacat
gcgctcgaatggccatcacttacagcccagtggcttcctgatgttacaaggcctgaaggc
aaagactactcagttcatcgacttatccttggtacccataccagtgacgaacagaatcac
ttgttgattgcctctgtccagcttcctaatgaggatgctcagtttgatgcctctcattat
gataatgataaaggagagtttggaggttttggatctgtgagtggtaagattgaaattgag
atcaagatcaatcatgaaggagaagtcaacagggctcgctacatgccccaaaatccctgt
gtgattgccactaaaacaccctcgtcagatgtcttggtttttgactacacaaaacatcca
tctcgtcctgatcctagtggggaatgccacccagacctccgtttgagagggcaccagaaa
gagggttatggcctgtcatggaatccaaacctcaatggtcatctgctctctgcatctgat
gaccacaccatttgcttgtgggatatcaatgcatcacccagagagaatcgtgtcttggat
gccaaaactgtatttactggccacacagcagttgtagaggatgttgcctggcatttactt
cacgagtcattgttcggttccgttgctgacgatcagaagctgatgatttgggatactcgc
agtaataacactagccgaccctcccacacagtagatgcacatacggctgaagtgaactgt
ctgtcatttaatccttactctgaattcatcttagcaactggttctgcagacaagactgtg
gctctctgggatttgagaaatctaaaactcaagctgcattcgtttgagtcgcataaggat
gaaatatttcaagtacaatggtcgccgcataacgagactattttggcatcgtccggcacc
gatcggcgtttgcatgtgtgggacttgtccaaaatcggagaagaacaatcgaccgaagat
gctgaagatggccctccagaattattgtttatccacggtggtcatactgccaagatctca
gatttttcatggaatccgaatgagccctgggtcatctgctccgtttcagaagataatatc
atgcaggtttggcaaatggcagaaaatatttacaacgatgaggagcccgagacgccagct
tcggaactggaaactcccactaactaa
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