Daphnia magna (water flea): 116928510
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Entry
116928510 CDS
T07514
Name
(RefSeq) mutS protein homolog 4 isoform X1
KO
K08740
DNA mismatch repair protein MSH4
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
116928510
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116928510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
HRI2_3H
AAA_27
AAA_29
RNF111_N
RasGEF_N_2
Motif
Other DBs
NCBI-GeneID:
116928510
NCBI-ProteinID:
XP_045033837
LinkDB
All DBs
Position
LG8:complement(721001..738999)
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AA seq
1005 aa
AA seq
DB search
MSSQRTVRHQPSGADGESELSASSLTGAANFPVSATPFSLAGTRRTNNESSFSDNIRRPS
SSIHHEGPSAASQWTENDMGSGPTSAKTTNSVFNLRFTSGSTMTSDSHYHQVFAQPSGRA
PRSSATPSLFAALTTPGPSRAAAPLRSPLPDVQPQLFGNAGSQPSAHSLPPPSTPLTPGI
RGGPPAITPRLTAGRTTVATPSVATPRTGRPRRDDNVIVGLVHGRGFARNEVGMAAINLT
ACELHLCQMTDSHGFVKTLTKMNLFRPTEVLMPDTALVPGSPSPLAQAISRFDSDIVMTA
VNRGAFNDTEGIHCVQKLAVVDHLNILVLIEQKYYALASASALMAHLENNLNITFAPGTL
RVYYSGTDKTAIIDSETANRLEVVSSLNPTGGPSLLSALNSCQTAAGKRLLRSNLLEPMT
DREAIRQRLDAVEELASRPTDLHQPIKEILSRFVDVERAVNQCVVVPKNPSPSFVEQRIN
AVVALRHILSLVAPLQAALAKANSPLIVSLAKELATVNDETLLSRIQDVLDERVKPVKGK
IGMQRQRFRAVKMGVDLMLDVCRRTHNDLETEMEEYVEDLSQKYQMPLTLANTAVRGYHL
QQTLGQARKKGDTNYQPPPPPPELPPVFVCVKKQGNCMAFTTQHLLVSNERIKSVEKDIE
KITNVVIEDLLAKTRSDIGSLYKLREIICQLDVIVSFAQVSSAGGFCRPAFANELVIRSG
RHPILDQFSPSALVSNDTEMTVESNFHVITGANMSGKSTYIRQVMLLQIMAQIGCFVPAS
SASFRIVDQMFSRLGTHDRLENNASSFSLEMTEMNYIVRNAGPKSLVIIDELCNETAADQ
GSAICWSICEALIMTQAWIMIATHTPLVTKLQDLYFNVSNYHMEVLEEEREDGRSKLDYT
HAIRPGVTQLENYGMKLACMLAFPPEILSRAKDLIPILTTNLKPLPKTTFDFKMNRLNYA
LHGKLLDIGRRMDALPDQTFLMEMQRVRDAYKEELNRIMAEHEAE
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgcaacggacggtgagacatcagccaagtggagcagacggcgaaagtgaattg
tcggcgagttccttgacaggagcggcgaatttcccagtgtcggccactcctttctccttg
gccggcacgaggcggacgaataacgagtcatctttttccgataatatccgtcgtccgtct
tcatccatccatcacgaaggaccgtcggcagcctcgcaatggacggagaatgatatgggt
agtggaccaacgtccgccaagactaccaacagcgtcttcaacttgcgtttcacttcgggc
agcacgatgactagcgacagtcactaccatcaagtatttgcccagcctagtggacgggca
ccccggagttcggcaactcccagtttattcgccgctctgacaacccccggtcccagcaga
gcagccgctcctcttcgttcgcctcttccggacgtccagcctcagctgtttggcaacgct
ggtagtcaaccatcggctcatagtttaccaccaccgtcgacacctctaactcctggaatt
cgcgggggtccaccagccattacgcctcgattaacagcaggacggacgactgttgcaaca
ccttccgtcgccacacctaggaccggccgtcctcgtcgtgatgacaacgtgatcgttggt
ttggtgcacggacgaggattcgcccgcaacgaagtcggaatggcagcgatcaacttgacg
gcgtgtgaacttcacttgtgtcagatgaccgattctcacggcttcgtcaaaactttgacg
aaaatgaatttattccgtcctactgaggtgttgatgcccgacacggccctagtgcccggt
tcgccctcgccccttgcgcaagccattagccgtttcgattctgacatcgtcatgactgcc
gttaatcgtggagcatttaacgatacggaaggcatccattgcgtccaaaaattggccgtc
gtcgatcacttgaacattctcgttttgattgaacaaaagtattacgccctcgcttctgcc
tcggctttaatggctcacctggaaaacaatttgaatattacgtttgctcctgggacgtta
cgagtctactacagcggcacggataagactgccatcattgattcggaaacagccaaccga
ctggaagtggtgagcagcttgaacccaaccgggggtccgtctctactttcggccctgaat
tcgtgccaaacagcggccggtaagcggctcctccgttcaaatttactggaacccatgacg
gaccgggaggccatccgtcagcgtctggatgccgtcgaggagcttgcgtcacgtcccacc
gacctccaccagcccatcaaggagatcctgtcgcggtttgtcgatgtcgagcgtgccgtt
aaccagtgcgtcgttgtaccgaaaaatcctagcccgtcgttcgtcgagcaacgaatcaac
gctgttgttgccctcaggcacattctatcactagtggctccgcttcaagctgccctagcg
aaagccaacagcccattgattgtctctttggctaaagaattggccaccgtcaatgacgag
acgctgctatcgcgcattcaggacgtgctggacgaacgggtgaagcctgtcaaaggcaaa
atagggatgcaacgtcagcgtttccgcgctgtcaaaatgggcgtcgatctcatgctggac
gtttgtcgccggacgcataacgacctcgaaacagaaatggaagaatacgtcgaggacctg
tcacagaaatatcaaatgcctttgacgttggccaatacggcagtgcgcggctatcacttg
caacagacgttgggtcaagcgagaaagaaaggcgacaccaactatcaacctccaccgcca
cctccagaattgccgcccgtctttgtctgtgtaaagaagcaaggtaactgcatggctttc
acgacccaacacctcctcgtgtccaacgaacgaattaaatctgtcgagaaggacattgag
aagatcaccaacgtagttattgaagatctattggccaagacgcgcagtgacatcggatcg
ctgtataaattgcgagaaatcatttgccaactggacgtgatcgtgtcgtttgcccaggtc
agctctgccgggggtttctgtcggcccgcattcgccaacgagctcgtcatccgttccggt
cgccatccgatcctagatcagttttcaccgagcgctttggtctccaacgacacggaaatg
acggtggaatcgaatttccatgtcatcaccggagctaatatgagcggcaaaagcacctac
atccgtcaagtgatgctactgcaaataatggcccagattggatgttttgttccggctagc
agcgcttcattccggattgttgatcaaatgttctctcggctcggcactcacgatcgcttg
gaaaacaacgcctcctctttctctctcgagatgacggagatgaactatattgttcgcaat
gccggcccaaagtctttggttatcatcgacgagctgtgcaacgaaacggctgctgatcaa
ggcagtgccatctgttggagcatttgcgaagcactcataatgacgcaagcctggattatg
attgccactcacacgccacttgtcaccaaattgcaggatctctactttaacgtttcaaat
taccacatggaagtccttgaagaagagcgtgaagacggacgatctaagctagattacact
catgcgatcaggccgggcgtcacgcagttggagaattacggcatgaaattggcttgcatg
ttggccttccctcccgaaatcctgagcagggccaaagacctgattccgattttaaccacc
aacctgaagcccctaccgaagacaacttttgacttcaaaatgaacagactcaactatgcg
ttgcacggcaagctgctggatatcggtcgcaggatggatgccctacctgatcagactttt
ctgatggagatgcaacgcgttcgtgacgcttacaaagaagagcttaataggatcatggcc
gaacacgaggccgagtga
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