Daphnia magna (water flea): 116929824
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Entry
116929824 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116929824
09123 Folding, sorting and degradation
03018 RNA degradation
116929824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116929824
03041 Spliceosome [BR:
dmk03041
]
116929824
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
116929824
mRNA cycle factors
Stress granule specific factors
116929824
Spliceosome [BR:
dmk03041
]
Complex C
Other components
Complex C specific factors
116929824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_7
RRM_10
RRM_MARF1
RRM_RdRP1_2
ApbA_C
Motif
Other DBs
NCBI-GeneID:
116929824
NCBI-ProteinID:
XP_045034207
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All DBs
Position
LG8:566738..569982
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AA seq
643 aa
AA seq
DB search
MNNTAGANYPIASLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNF
QQPADAERALDSMNFDVLRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTF
SAFGNILSCKVAQDEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKD
RERELGEKAKYFTNVYIKNFGDEFDDEKLFECFSKYGKVTSHKVMSSDDGKSRGFGFVCY
EDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVNLYV
KNLDDTIDDERLRKEFAPYGTITSAKVMTEGGRNKGGFGFVCFSSPEEATKAVTEMNGRI
LVSKPLYVALAQRKEDRKAQLASQYMQRMAGMRMQQMGQMFQPGGPGYFMPAPIQPQRFY
TPAQMAQFRATPRWSAQPQVRPTAQLNQQGAGYPVSAQYRGGVPPRGQPPVVRSMQSARP
ITGQQPMVPQGMPGRSLGMPSGGPVMPQPRPGFKFTPAMRNPPTQGSLPSNAMGGSAAGG
MQQALVVQGQEPLTASMLASAAPQDQKQMLGERLFPLIQRMYPDMAGKITGMLLEIDNSE
LLHMLEHNESLKAKVDEAVAVLQAHQAKQVAAQVASVVQPKEE
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacactgctggagctaattacccaatcgcctctctgtacgttggtgatcttcac
aatgaggtcactgaagccatgttatttgagaagttttccactgctgggcctgtggtctct
attagagtttgcagagacatgattactcgtcgctcactgggctatgcatatgtcaacttc
cagcaaccagctgatgctgaaagagcattggacagtatgaactttgatgtgctgcgggga
agaccaattcggatcatgtggtcacaacgtgatccatctctccgtcgctctggtgttggt
aatatcttcatcaaaaacctcgacaaaactattgacaacaaggccatgtacgacacattc
tctgcatttggcaacatcttgagctgcaaagttgctcaggatgaggctggcaactctaaa
ggatatgggtttgtccacttcgaaactgaagagtctgctgtaaatgcaatcaccaaagtc
aatggcatgttgctcaatgggaaaaaggtctttgtcggccgttttattccacgcaaagat
cgtgagcgtgagttgggagaaaaggccaaatatttcacaaatgtttatatcaagaatttt
ggtgatgaatttgatgatgaaaaactgtttgaatgcttttctaagtatggaaaagttact
tctcacaaggtcatgtcaagtgacgatggaaaatcgcgagggtttggtttcgtgtgctat
gaagatcctgacgctgcagaaagagcctgtgatgatatgcacgctaaggatatgaatggc
aaaaccttattcgttggtcgtgcacagaaacgcaatgaacgtcaaacagaacttcgtcgt
aaatttgaacaaatgaaaatagaacgccttaatcgttatcaaggcgtcaacctgtacgtc
aagaacttggatgacaccatcgatgacgaacgccttcgcaaggaatttgcaccatacgga
accatcacctcggctaaggttatgacagaaggaggtcgcaacaagggaggtttcggtttc
gtttgcttttcatcaccggaagaggcaaccaaagccgtaaccgagatgaatggccgtatc
ttggtttccaaacctttgtacgtagccttggctcaacgtaaggaagatcgtaaggctcag
ctcgcatcgcagtacatgcagcgaatggccggcatgcgtatgcaacaaatgggtcagatg
ttccaaccgggtggtcctggttactttatgcccgctccaattcagccgcaacgcttttac
actccagctcagatggcacaattccgtgccactcctcgctggtctgctcaacctcaggtt
cgcccaacagcccagcttaaccaacaaggtgccggatatcccgtttcagcacagtaccgt
ggtggagttccccctcgtggtcaacctcccgttgtccgctcgatgcagtcggcccgtccc
atcactggtcaacagccgatggtgccccaaggaatgcctggccgttccctcggtatgccc
tccggtggaccagtcatgcctcaaccacgccccggattcaaattcactccagccatgcga
aatccacccacacaaggctctcttccatcgaacgccatgggtggatcagctgccggtgga
atgcaacaagcgctcgttgtgcaagggcaggagccgttgactgcatccatgttggcctca
gctgctcctcaggatcagaagcaaatgcttggagagcgtcttttccctcttattcagcgc
atgtatcccgatatggctggaaagatcaccggcatgttgttggagatcgacaattcggag
ctgttgcacatgttggaacacaacgaatcactcaaagccaaggtggatgaagccgtcgcc
gtactccaggctcaccaagctaaacaagtggctgcgcaagttgcttcagttgttcaacca
aaagaggaataa
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