Daphnia magna (water flea): 116929871
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Entry
116929871 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1
KO
K05636
laminin, beta 1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116929871
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
cobW
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
116929871
NCBI-ProteinID:
XP_045030554
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All DBs
Position
LG1:complement(13874106..13886878)
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AA seq
1847 aa
AA seq
DB search
MDSKFSLFLLIVVAATCLTNVVSGKTTIIKSHRSRLSSTRNTVRNSSVVYGQSRVSHRTE
EANAIRTSSGAVVSMADRIHPLSDLALHEPGVVSQRPHPCEQSSCYPATGNLLLGREMRL
SSTSTCGLQKKEKYCIVSHLEDKKKCFWCDSRPEQVNSPSSHHIQNILYRYTPTSRRRSW
WQAQNGVENVSIQLDLEAEFHFTHLIMTFKTFRPAALLIERSYDFGRTWKIYRYFAYNCA
ESFPGISREPPRNLTEVICESRYSGVAPSTEGEVIFRVLPPNLPIDDPYSQEVQNLLKMT
NLRVNFTKLHTLGDDLLDNREEIQDKYYYAIYDMVVRGSCSCYGHASRCLPLPGVDQRTD
MVHGRCECTHNTKGLNCEQCEDFYHDLPWRPAIGRQTNACKRCNCNQHSDQCHFDPAVYE
ATSRISGGVCDDCRHNTMGRNCEQCKAFFYQDPTKPISDADVCLPCDCDPSGSLDDGICD
ARSDPSGGIQAGQCHCKRHVEGRRCDQCQHGYWNFTEENPDGCQECSCNLLGTYENQGCN
VYSGECVCKRYVTGRDCDQCLPEHWGLSEARDGCKACECDPGGSYDNNCDILTGQCKCRP
HVTGRTCSQPEHGYFAGLLDYRIYEAEYGGISDRAQLQIREPYRDREPSWTGPGFVRAVE
DSSIQFTLDAISQSMEYDLVIRYEPQLSGQWEDVRVVIERPDEVDPDGPCANLNNQQGPP
GSGGLEISRISLPSGARHAVVYPPTCLEAGKKYNVRLEFKSYDSNQETPSAAVLIDSITV
VPRAGSIPFLGGSPAADYRRQEFDHFRCAQYFYSVVKTNIPEVCRKHLYSIGFYVLGSGF
ECECDPTGSSSSICDSLGGQCSCKPNVVGRKCDQCAPGTFGFGPEGCTPCECNSVGSLDN
FCDSGTGQCRCRPNTYGRVCDQCQPGYWNFPSCQRCECNGHADLCDSRTGRCLDCRDFTT
DDHCDRCLDSYYGDPRLGVDIPCRACPCPGTINSGHSYAPRCSLDRETQDVVCECQEGYA
GPRCDVCADNYFGNPEVPGGQCRPCQCSNNIDLSRPGNCAGKSGECLQCLFNTEGFSCEV
CQKGFFGDALSQQCTPCVCNLLGSDSSLEGPSVCNRQTGQCPCLPNVEGLSCDRCAVDHW
KIASGEGCEACSCDPVGSLSTQCNEFDGQCECREGFGGRKCDQCRTNYWGNPSDNSCRPC
NCDPQGSSTQQCHHATGACICLPGMGGEKCDRCARGYVGAIVPDCQPCGECFDNWDRILQ
ELRGQTEQVVVAAGQIRETGATGAYTREFETMETKLTEVRTLLVNTTLSGRELSQLEQLF
ESIKTNLTSAGQGMDGLDATVENTTQRIFSVGLALSNLRAKATDLQTAAQSLKDNATKLQ
EANVEGALNLTREARQRSQKAQDRVEFTQQPVSDSERQRRRTEALLSRVAPQLGESQQRN
AAELADLGGRLAVVERSLPELNDAVCDGRGDPCDSLCGGGGCGKCGALSCDEGSVTKAEN
ALSLAKEAEGILRNRQTESEEMMRGVRQAETEADNARSLAREALLAAELAQNRSEAAKAE
VDELMNQIDEFLEESGASPADIRSLATDVLSKGISLRPEQITDLARRINDTISSLTNIDA
ILAETSGDLASAKALKDRADTAKAHAQGILTVAQQVLDSLAAAKAAQDKAEEAIQTADKD
ISAAESHLTQIASETADAQAKASESVQEVEGLRERLRELQRKLIKNERDVKEATRESDVA
ASLATRAGQGASELDTAYQRALRALEEKTARSGDARERSARLQDKANRLTASVFAKVQEL
KEMEDEYLLHERRLTDLSEQVMAMNVRMTDYLQVISDRSEFYRTCQK
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atggattccaaattcagtctattcttactcatcgttgtcgctgcaacatgcttaacaaac
gtagttagcgggaaaacgacgattatcaagtcgcatcggagcagactgtcgtccaccagg
aacactgtgcgaaacagttcggtggtttacggccaatcccgcgtctcacatcgaacggaa
gaggccaacgcaatcagaacatcatctggggctgtcgtttcgatggcggatcggatccat
ccgctatctgatttggccctgcacgaaccaggtgtcgtgtcacaaaggccgcatccctgc
gagcagagttcgtgttacccggcaacaggcaatttgttgctcggcagagaaatgcggctc
tcgtccacgtccacctgtggtcttcaaaagaaggaaaaatattgcatcgtttcccatttg
gaagataagaaaaaatgtttttggtgtgactcaaggccggaacaggtgaacagccccagc
agtcatcacattcaaaacatcctctaccgttatactcccacgtcacgtcgacgatcttgg
tggcaagcgcaaaacggtgtcgagaacgtcagcatccagctggatctggaagccgaattc
cactttactcacttgatcatgacgttcaagactttcaggccggctgctttacttatcgag
cgctcttatgattttggacgaacgtggaagatctaccgctactttgcctataattgcgcc
gaatcattcccgggcatttcacgtgaaccgccacgcaacctgacggaagtgatttgcgaa
tcgcgttattctggcgtcgctccttctacggaaggtgaggtcatcttccgcgttctgccg
cccaacttgcccatcgacgatccttactcgcaagaagttcagaatctgctcaaaatgacc
aacttacgcgtcaattttacaaaacttcataccctcggcgatgatttacttgataatagg
gaggagatccaggacaagtattactacgccatctatgatatggttgtgcgaggttcgtgc
tcttgctacggtcacgcttctcgttgtttgcccttgccaggcgttgatcagcgaacagac
atggttcacggtcgttgcgaatgtacccacaacaccaagggtcttaattgcgaacagtgt
gaagatttctaccacgatctaccttggagacctgccatcggtcgccagaccaacgcttgc
aagcgctgtaattgtaatcaacactctgaccagtgccatttcgatccggccgtctacgaa
gctacttcacgcatttctggtggtgtttgcgacgattgcagacacaacaccatggggcgc
aattgcgaacaatgcaaagccttcttctaccaggatccgacaaaaccgattagcgatgcc
gacgtttgtttgccttgcgattgcgaccctagtggctctttagacgatggcatttgcgat
gcacgatctgatccttctggtggaatccaagccggccaatgccactgcaaacgtcacgtg
gaaggccgccgctgcgaccaatgccagcatggatattggaattttaccgaggaaaaccca
gatggctgccaagaatgcagctgtaacttgctgggcacctacgaaaaccagggttgcaac
gtctacagtggcgaatgtgtctgtaaacgctacgtgacaggccgtgactgcgaccaatgt
ctaccggaacattggggtttgtcagaagctcgtgatggctgcaaggcgtgcgaatgcgat
cctggaggctcctacgataacaactgcgatatattgactggccagtgtaaatgccgaccg
catgtaacgggtcggacttgctctcaaccagaacatggttactttgctggactgctagac
taccgtatctacgaagctgaatatggtggcatttcagatcgcgcccagctccaaattcga
gaaccttacagagatcgtgagccaagttggactggacctggctttgttcgcgctgtcgaa
gactcatccatccagttcactttggatgccattagccaatcgatggaatacgatttagtt
attcgctacgaacctcaactgtctggacaatgggaggacgttcgggtagttatcgaacgt
cctgatgaagtcgaccccgatggaccttgtgccaatctgaacaatcagcaaggacctccc
ggtagtggcggcttagaaatttcacgaatttcgcttccatctggagcccgtcacgctgtc
gtctatccgcctacctgcctggaagccgggaagaaatacaacgtccgcctggaatttaaa
tcttatgattccaaccaagaaacgccatccgccgctgttttgatcgattcgatcacagtc
gtgccgcgtgctggttcaattcctttcctgggcggatccccggcagctgactaccgccgc
caagagttcgatcacttccgctgcgcccagtacttttattctgtcgtcaagacaaacatt
ccggaagtctgtcgcaagcatctctacagcattggcttctacgtccttggatcaggtttc
gagtgcgagtgtgatcctactggatcttccagtagcatctgcgactccctagggggtcaa
tgttcatgcaaacccaacgtcgtgggaagaaaatgcgaccagtgcgctcctggcactttt
ggattcgggccggaaggttgtacaccatgcgaatgcaactctgttggatcgcttgacaat
ttttgtgacagcggaactgggcagtgccgttgccgaccaaacacctatggtcgtgtttgc
gaccaatgtcaaccaggatactggaacttcccttcgtgccaacgctgcgagtgtaacgga
catgctgatctttgcgattcacgcacaggacgatgcctggactgtcgtgattttactact
gatgaccattgcgatcgttgtctggacagttactacggagatcctcgtttgggcgttgac
atcccatgtcgagcttgtccttgtcctggaaccatcaattcgggacattcctacgcacct
cgctgttcactggatcgtgaaacacaagacgtggtgtgcgaatgccaagaagggtatgcc
ggtccacgctgtgacgtctgcgctgacaactattttggcaatcccgaagtacctgggggc
cagtgccggccttgccagtgtagcaataatatcgatctttctcggcctggcaactgtgcc
ggaaaatctggcgaatgccttcaatgtttgttcaacacggaaggatttagctgtgaagtt
tgccaaaaaggtttctttggcgacgccctctcccagcaatgcacaccgtgcgtttgcaac
cttctgggcagcgattcatcattggaaggaccgtctgtctgtaaccgacaaacgggtcag
tgtccttgtttgccgaatgttgagggcttatcgtgcgaccgctgcgcagtcgaccattgg
aaaatcgcatctggtgaaggttgcgaggcttgcagttgcgatcctgtcggctctctctcg
acacaatgtaacgaatttgacggccaatgcgaatgccgcgaaggcttcggtgggcggaag
tgtgatcagtgccgcaccaattattggggtaatccatctgacaactcgtgccggccttgc
aactgcgatccgcagggatcctccacacagcaatgtcatcacgcaacaggtgcttgcatc
tgcctgcccggtatgggtggtgaaaaatgtgatcgttgcgctcgtggatacgttggcgct
attgttccggattgtcaaccatgtggcgaatgtttcgacaactgggatcgcattcttcag
gaattgcgtggccaaacggaacaagttgttgtggctgctggacaaatccgcgaaacgggc
gctactggagcctacacccgggagtttgaaacaatggaaactaaattgacagaagtacgg
actctacttgtcaacacaaccctcagcggccgcgaattgtcgcaactggaacagcttttc
gaatctatcaaaaccaacttgacatcagctggacaaggaatggacgggttggatgccaca
gttgaaaacacgacccaacgtattttctctgttggtctcgccctctcaaacctaagggcc
aaagcaacggaccttcaaacggcggcccagtcactcaaggataatgccaccaaactgcaa
gaagccaacgttgaaggagcactcaacctgacccgcgaagctcgtcaacgatcccagaaa
gcccaagatcgtgtcgagttcactcagcaaccggtcagcgattcggagagacagcgtagg
aggacggaagcattgttgtcacgtgtcgctccacagctgggcgagagtcaacagcgaaat
gcagctgaacttgctgatctcggtggtcgactggctgtcgtcgaacgctccttacccgaa
ctgaacgacgctgtctgtgacggacgcggtgatccctgcgacagtttgtgtggtggcgga
ggatgcggcaagtgcggagctctgtcatgcgatgaaggatctgtcacgaaagctgaaaat
gcgctcagcctggctaaagaagcggaaggtattctgcgcaatcggcaaaccgaatcagaa
gagatgatgcgcggcgtacgccaggctgaaaccgaagcggataatgcccgtagtctggcc
cgtgaggcacttttagctgccgaattggcgcaaaaccgttctgaagcagccaaagccgaa
gttgacgaattgatgaaccaaattgacgaattccttgaagaatctggcgcaagtccggcc
gacatccgatcgttggctactgatgttttgtctaagggtatttcgttacgacccgaacag
atcactgacctagcacgacgcattaacgacactatctcttccctgaccaacattgacgcc
attctggccgagacgtctggtgatttggcttcagcaaaagcactcaaagatcgtgccgac
accgccaaagcccatgcccagggaattctgactgttgctcagcaagtgctcgactctttg
gctgccgctaaagccgcacaagacaaggcagaagaagctattcaaacggctgataaggat
attagcgcagctgaatcgcatctaacgcagattgctagtgagacggccgacgctcaagcc
aaagccagtgaatcagtccaggaggtcgagggactgcgggaaaggttacgtgaattgcag
cgaaagctgataaagaacgagcgagatgttaaagaagcgacccgcgagtctgacgtggct
gcatcgttagctacccgcgccggacaaggcgcatcagagttggacacggcttatcagcga
gccctgcgggctttggaagagaaaacggcaagaagtggtgacgctcgtgaacgctccgcc
cgtcttcaagataaggctaatcggctgacggcaagcgtgtttgccaaagttcaagaactt
aaagaaatggaggatgaatacttgttgcatgagcgtcggttgacagacctttctgagcaa
gttatggccatgaatgtgcgcatgaccgactacttgcaagtcattagcgaccgctcggag
ttctaccgcacctgccaaaagtag
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