Daphnia magna (water flea): 116929945
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Entry
116929945 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk02010
ABC transporters
dmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116929945
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116929945
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dmk02000
]
116929945
Transporters [BR:
dmk02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116929945
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_23
AAA_15
Motif
Other DBs
NCBI-GeneID:
116929945
NCBI-ProteinID:
XP_032793153
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All DBs
Position
LG9:1559958..1569342
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AA seq
2089 aa
AA seq
DB search
MFFLQLRQLMWKNYVVRIRSKARVIAEIIWPLAIFIILALVRLEGLKQYQKECYLKEKAL
PSAGPVRFYKSLICTPMNWCYNDYQNHTDFFDEILEFERARKLISRMENVLIKGSAHVEA
VVNLGYSSALKRLSVWDSDGVYEEGHENEQSPNSTNSLLQNFTTDILPSPDNXKNFGAQK
RDATLSKIRKLNFEGGKSVESLDDLNAEFQRLDSTFSIFKEISDSEIGKFAERLWISRDK
SNIDNEPNSTSVLPLLTTVCGSNPLPSSFYSSRATPRLSKKRNLHRSPSNFERSSPVKTT
DTLPEICTDLFATLQNDSRTEALFEYIYPFIRGRLVYAPNTPAFTRLVEKVNTTFQDIQT
IQNLANGWLEISPNITSMLNDLEETITEAIDNFENSPDIVAVLEEALIRIQSIQIIVVQL
DSLAKFFSVYIECYEFDKFEGFPSEEEAVVRGLNLLNENQLWAVIIFDNADSNFTSEDEL
PKHLKYKIRMDKFVIDTTERIKDYVETPLPRNDPRAGHMKYFSSGFIYLQDKIEQSITAL
QSMSETFPGMFMQQFPSPCFVFDTFLFAIGPSFPLYMNLAFVFTCAMIIKSVVYEKERRL
KETMRTMGLSNGVHWLAWFIDSLLILLFACIMLPLIIYFGNILEKSNPFVVFVFLLSFSI
ATICFSFLVSTFFSRANLAAASGAFIYFLCYQPVSLLDLGFETSPYAANLLLSLFSNVAF
GIGNAYLIGLEESGEGAQWNNIGTSPREGDTFSLLECILMLLLDSVIYLVLTWYIETVFP
GQYGIPKPWYFMFQSSYWFSGKDNANVVTFGPRSGAENSDLIEDESSRNLMVGVSIRNLG
KTYSNGKVALTNLNLDFYEDQITSFLGHNGAGKTTTISILTGLFPPSSGTASINGLDIRY
QIDDIRHQLGVCPQHNVLFDQLTVEEHLRFFANLKTGEQMESRKEIDKMIEDLGLSHKRH
DISEHLSGGMKRKLSIGAAFIGNSKTVILDEPTAGVDPYSRRSIWDILLKYKAGRTIILT
THFMDEADLLGDRIAIISQGQLKCCGSSLFLKQKLGSGYYLTVVRKDDTSHDGPINNGQA
NENQVPRNAMEIDTERIVTLVKRHIPNATIVENVGSDIVFCLPEFDEAGLRQRNKFPHLF
DELDLNMEQLRVDSYGVSDTTLEEIFLRVADDPSADSNFPPPSVSDLGDENPYREENGGS
DSFNLESNEKLKGKKLVAQQMKAMYIKRFNNSKRNVKGFFCEIVLPCILVIIGELFSLTL
DLETPQPPLVLSPWLYGDVNQVFYSNRELNDNWANAYVHNMLNETGMGVRCLDGEPLLGL
NCSIYNIGLLNPTANPETYQDINCPCNDFGAPICPANATQGELFHYGSVSYDEFFDLADK
NISTWILRTHEEFNEIRIGGFEFGVHQNPPIQNASENNVRVWFDNKAWASSVSYLNAINN
VILRSSLPPSKDPFLYGITVINHPMEFSSREVVDNEQVAVSLAYALTVLFALSFVPASFV
IFLVEERTSKAKHLQFVSGVKPTTFWVASYTWDLVNYLIPCILVILIFLAFGQWEYVGAT
SIGGFIILLILFGVSAIPLMYPTSFVFSVPSTAFVGLACANLFIAIVTVISSYVLQLFDD
EHLIAVGEILDQVFLIFPHFCFGRGLIDLAETYFTAKNFELIGVVYERNIFEWNYLGRYF
VCFILQALVFFAFNLMLHYPFFPKLIARYYQKKSLPPLGPEDADVARERARVEKSNAYMD
ELLLQRLTKVYNGQKNPATDRLSFGLKKGECFGLLGVNGAGKSTTFKMLTGDETVTNGNA
FVGGSSILTDLSEAQQNLGYCPQEDALLPLLTGVEHLQLFARLRGVPKQYINKLVNDNLR
KLSLLPYKDRCAGTYSGGNKRKLSTAIALVGNPAVVFLDEPSSGMDPRARRSLWQAVIDA
VNDSRSVLLTSHSMEECQVLCTRLAIMVNGTLRCLGSAQHLKNKFGDGYMINVRCEVETI
SEVLQCVESLIPEARLRERRSRQLIWHVQPNLLQISTLFQRMEDARTATPMVDYSITQTT
LDDVFVRFARLQREVLDDGASEEPDFDSSTLSGTHNNSISTDDDLLTSL
NT seq
6270 nt
NT seq
+upstream
nt +downstream
nt
atgttttttttacaacttcgtcagttaatgtggaaaaattacgttgtgagaatccgatcg
aaagcacgagtaatcgcagaaattatatggcctttggctatatttatcattttggctctt
gtccgactggaaggtttaaagcaataccaaaaagaatgttatttgaaggaaaaagcttta
ccatcagccggcccggttcgattttacaaaagcctaatctgcacgcctatgaactggtgt
tacaatgattaccaaaatcacaccgacttctttgatgaaatactggaatttgagcgggct
aggaagctgattagtcgaatggaaaacgtcctgataaagggatccgcacacgttgaggct
gtggtcaatttaggttattcttccgctcttaaacggttatctgtatgggactctgatggt
gtctacgaagaaggtcacgaaaatgaacaatccccgaattccaccaactctttgctgcaa
aactttactacggatattctgccatcgccagataacnaaaaaaattttggcgcacaaaaa
agagatgcaactttatcaaaaattagaaaactcaattttgagggtggaaaatcagtcgaa
tctcttgacgacctaaatgcggaatttcaacgtttggattcaacattttccatcttcaag
gaaatttctgattcagaaattggaaagtttgctgaaagactatggatttcaagagacaaa
agcaacatcgacaatgaacccaactcgacttccgttttacctctccttacaacagtgtgt
ggtagtaatccactaccttcgagtttctacagctcaagagcaactccaagactctctaag
aaaagaaatttgcatcgtagtccgagtaattttgaaagaagctctcccgtgaaaaccaca
gacaccctcccggagatttgcactgatctttttgcaactttacagaacgattcgcgaact
gaagcactttttgagtacatctatccttttataaggggaagactagtttacgcacccaat
acacctgcgtttactcgtttggttgaaaaggtgaacacaactttccaggacatacaaact
attcaaaacttggctaacggttggctggaaatttcgcctaacattacttccatgttgaac
gacctcgaagagactattactgaagccattgataattttgaaaattctcccgatattgtt
gcagttttggaagaggccctcatacggatacagagcatccaaatcattgtagtgcaacta
gactctctcgccaaattttttagtgtgtatatcgagtgttacgagttcgataaatttgaa
ggcttcccttctgaagaagaagctgtcgttcgtggtctcaatttgttaaacgagaatcaa
ctatgggctgtcattatattcgacaacgccgactctaatttcacatcagaggatgaacta
cctaaacaccttaaatacaagataaggatggacaaatttgttatcgacacaactgagagg
ataaaagattatgtggaaacaccattaccccgaaatgaccctcgtgctgggcacatgaaa
tattttagctctggctttatatacttacaagataaaattgagcagtcaattactgcactc
caatctatgagtgaaacttttcctgggatgtttatgcaacaatttccaagtccttgtttt
gttttcgacacatttcttttcgccattggacctagctttccactctacatgaatctagcc
ttcgtcttcacttgtgccatgatcatcaaatcagttgtttacgaaaaagaacgtcggctc
aaggaaactatgagaacgatgggattaagcaacggagtccattggttggcatggtttatc
gacagtcttctcattttgctcttcgcctgtatcatgctcccacttattatctactttgga
aacattttggaaaaatcgaatccgttcgtcgtttttgttttcctcctaagttttagtatc
gcgaccatctgttttagctttttggtttcaactttcttcagccgagccaatcttgctgcg
gcatcgggagcttttatctattttctttgttaccaaccagttagtctcctcgacttgggt
ttcgaaacatcaccatatgcggccaatcttctattgagtcttttttcgaatgttgcgttt
ggcattggcaacgcatatttgattggacttgaagaaagtggagaaggtgctcagtggaat
aatattggaactagtcctagagaaggagacaccttctcactgttggaatgcatattgatg
cttttgctcgactcagtcatttatttagtactgacctggtacatcgaaacagtcttccca
gggcaatatggtattccaaaaccatggtattttatgtttcagtcttcctactggttttca
ggtaaagacaatgctaatgttgtcacctttggcccacgctctggagcagagaactcggat
cttatcgaagacgaatccagtagaaacttgatggttggagtgagcatccgaaatctagga
aaaacctattcaaacggaaaagtcgcacttaccaatctcaatctggatttttatgaggat
caaattacttcctttcttggacacaatggagccggaaaaactacaacaatttctatcttg
accggactgtttcccccgtcgagtggtactgcatcaatcaacggtttagatatccgttac
caaatagacgacattcggcatcaacttggtgtatgtccgcaacacaacgtccttttcgat
caacttacagtggaggagcatttgcgcttctttgcaaatttgaaaactggagaacaaatg
gagtctcgaaaagaaattgacaaaatgattgaagacttggggttgtcgcacaaaaggcat
gacatatcagaacatctttccggtggaatgaaaagaaaactttcaattggagccgctttc
ataggaaattctaaaacggtgatcctggatgaacccacagcaggagtagatccttattct
cggcgctccatctgggatattcttttaaaatacaaagctggccgaaccatcatcctaact
acccattttatggatgaagctgatttactgggagaccgtatagcaatcatttcacaagga
caattgaaatgttgcgggtcgtccctctttcttaagcaaaagctaggatccggctactac
ctaactgtcgtcagaaaagacgataccagtcacgacggtccaataaacaacggtcaagca
aatgaaaaccaggtcccccgaaacgcaatggaaattgatacagaaaggattgtaaccttg
gtgaagcgacacattccaaatgcaactattgttgaaaatgtagggtctgatatcgtgttt
tgccttcccgagtttgatgaagcaggacttcggcagagaaataagtttcctcaccttttt
gatgagctagacttgaacatggaacaacttcgtgtcgatagctatggcgtttcggacacc
acacttgaagagatttttttgagggtggcagacgatccttccgctgattcgaattttccg
ccgcccagcgtttctgatcttggagacgaaaacccatacagggaagaaaacggtggttct
gattcctttaatttggaatcgaatgaaaaactgaaaggaaaaaaattagtagctcaacaa
atgaaagcaatgtatattaaaagattcaacaactccaaaagaaatgtgaaaggattcttc
tgtgagattgtgttgccatgcatcctagtcatcatcggtgagctgttctcattgactcta
gacctggaaactcctcagccacccttagttctttcaccttggctatacggagatgttaac
caagtattctattcgaatcgcgaactcaatgacaactgggccaatgcatacgtgcataat
atgttgaacgaaacgggaatgggagtcagatgtttagacggcgagccgttgcttggatta
aattgttctatatataatattggactactcaatcccactgctaatccggaaacttatcaa
gatatcaactgcccatgtaatgactttggtgctcccatctgcccagccaatgccacacaa
ggagagttattccactatggctctgtttcgtacgacgaattttttgatctagccgacaaa
aacatatctacctggatacttcggacgcacgaagagttcaacgaaatcagaatcggtggt
tttgaattcggcgtgcaccagaatccacccatacaaaatgcttctgaaaacaacgtgagg
gtgtggtttgataacaaagcttgggcttcctctgtctcctatttgaacgcgatcaataac
gtcatcttgcgttcgtctttaccaccatcaaaagatccatttctatacgggatcactgtg
atcaatcaccctatggaattctcgtctagagaagttgttgataacgaacaagttgcggtt
agtcttgcgtacgcgctcacggttttgtttgcattgagcttcgtacccgcttcgtttgtc
attttcttggtagaagaaagaacttccaaggctaagcatctgcagtttgtctctggtgtg
aaaccgacaactttttgggtagcatcgtacacttgggacctggtcaactatttgattcca
tgtattctagtaatcctgatattcctcgccttcggtcaatgggagtatgtcggagcaaca
agcatcggtggttttatcattttactgatacttttcggtgtttccgcgattccgcttatg
tacccgacaagttttgtcttttcagtaccgagcacagcttttgttggcctagcatgtgct
aatttattcattgcaatcgtcacagtcatttcatcttacgttcttcagctctttgacgat
gagcacttgatcgcagttggtgaaatcctcgatcaggtgttcctcatattcccgcatttt
tgttttggtagaggtcttatagatttagctgaaacctatttcacagcaaagaatttcgaa
ttgattggtgttgtttacgaaagaaacatatttgagtggaattacctaggccgctacttt
gtttgcttcatattgcaagcccttgtcttcttcgcatttaacctgatgttgcactaccct
tttttccctaaattgattgcacgctattatcagaaaaagagtttacctccgctaggacct
gaagatgcagatgtcgcccgcgaacgcgctagagtcgaaaaaagcaatgcgtatatggac
gagttgctcctacaacgactgacgaaggtttacaacggacagaagaatccagctacggat
agattatctttcggcctaaagaaaggcgaatgctttggattacttggggtcaatggcgct
ggaaaatccacaacgttcaagatgctaactggagatgaaactgtaacgaatggaaacgct
tttgtcggcgggtcgtctatcctcacggacttaagcgaagcccagcaaaacttgggttat
tgcccacaagaagacgctcttttgcccttgctgacaggcgttgagcacctacagcttttc
gcaaggcttcgtggagttcctaaacaatacatcaacaagctcgtcaacgataatcttagg
aaattaagccttcttccttacaaagaccgctgtgcgggaacgtattctggaggcaataaa
cgaaagttatcgacagctatagccttagtgggaaacccagcagtcgtattccttgatgaa
ccgtctagcggtatggacccaagagctcggcggtctctttggcaagcagtcattgacgct
gtaaacgattcgcgttctgttttgcttacttcgcattccatggaggagtgtcaagttctc
tgtactcgtctagccatcatggtcaacggaacgctacgttgtttgggttctgcacaacat
ctcaagaacaagtttggcgacggttatatgataaacgtacgctgcgaagtggagaccata
agcgaggtgttgcagtgcgttgagtcactcattcccgaagcccgacttcgtgaacggcgt
tcacgccaactcatttggcacgtccaacccaacctgttgcagatatcaacattatttcag
cgaatggaagacgctcgaacagccacacccatggtcgactattcgatcacccaaactaca
ttggacgatgtatttgtccgctttgcacgtctgcaacgagaagttcttgacgacggagct
agcgaagaacccgattttgactcgtcaacgctatctggaacacataataacagtatttca
acggatgacgatctacttacgtcgctctaa
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integrated database retrieval system
