Daphnia magna (water flea): 116930106
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Entry
116930106 CDS
T07514
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
116930106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116930106
03036 Chromosome and associated proteins [BR:
dmk03036
]
116930106
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
116930106
Coactivators
SAGA/TFTC/STAGA complex
116930106
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
116930106
STAGA complex
116930106
TFTC complex
116930106
SAGA complex
116930106
SLIK complex
116930106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
TFIID_NTD2
Beta-prop_DCAF12
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_DCAF4
RMC1_N
WD40_RFWD3
Beta-prop_IP5PC_F
Beta-prop_HPS5
WD_LRWD1
PROPPIN
Beta-prop_WDR11_2nd
EF-G-binding_N
Beta-prop_RIG_1st
GD_AH_C
Motif
Other DBs
NCBI-GeneID:
116930106
NCBI-ProteinID:
XP_032793363
LinkDB
All DBs
Position
LG9:1404550..1406987
Genome browser
AA seq
564 aa
AA seq
DB search
MEQTSSILGGNMKRSKYESIINAAGRHLLKRNCTDSDILKKNKLKLKQTTEQFENSSVWS
QKIISVQNSSLSEQEADLQFSKLKAWVESLDDGARIEIDEILFPAFISLYRKLNVSGNTS
GARGFYARNQSNFFKVPELRKMAERFCSENTSHFILELSQEPYEILHSYIGSNEHPLLQQ
LLNTTLEISIIKTKIDSSDPSQAISKSHEDSSNMEEVQDLMAAISRLDELPPTAPLLKLY
SIDTGQRRMSAASASPCQGYLSCGFQDSSVAIWDVKELRSPSLSDVSRSNLSESCAIGLY
HPVASTLTFPLESDSSVSICLGHTGAVYATQFTPNNTYMLSCSDDTTLRLWDMSSMENAV
VYRGHTYPVWAMDVSQQGQYFASASQDRTAKIWMFDRTFPLRILAGHTADVDCVTFHPNG
LYLATGSADSSVRMWHVAEGKTVRILVGHRGTVLAVAFSPCGKLLASAGEDHRVKIWDVA
AGSILHDYAGHHDVIHGLVWISENVLGSYSADGNIRVWNVTQHSFPPSQQSQQELASYSV
SAPTKIVHLGRGNQSTLVCIAASD
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggagcagacttcctctattttaggaggaaacatgaaaagatctaaatatgaaagcatt
attaatgctgccggtagacatcttttaaagcggaattgcacagattctgatattctgaaa
aagaacaagttaaagttgaagcagaccaccgagcaatttgaaaactcctccgtatggagc
cagaagataatttctgttcagaattctagccttagtgaacaagaagcagatcttcaattc
tcaaaattgaaggcatgggtggaatctctagatgatggtgctagaatcgaaatagatgaa
attctttttcctgcatttatttcactatacagaaaacttaatgttagtggtaacacaagt
ggagcaagagggttttatgcccgcaaccagtcaaactttttcaaagtgcctgaactccgg
aaaatggctgaaagattttgttcagaaaataccagtcattttattctggagttgtcccaa
gaaccatatgaaatacttcatagttatattggaagcaatgaacacccccttttgcaacaa
ctacttaacacaaccttggagatcagcatcattaaaacgaaaattgactccagtgatccc
tcacaagcaatttctaaatcacatgaagactcgtcaaatatggaagaagtgcaggatttg
atggctgccatttctcgattggacgaacttccgcccactgctccgttattgaagttatat
tctatcgacacaggacaaaggagaatgagtgcagcctctgcctcaccctgccaaggctat
ctttcctgtggatttcaagattcatccgtggccatctgggatgttaaagaactacgatca
ccgtctctgtcggatgttagtcggtcaaatctctctgaatcctgcgccatcggcctctat
catcccgtggcttccacattaacgttcccactggaatccgattcttccgtctctatatgt
ttgggacatactggtgctgtttatgctactcagttcacgcctaataacacttacatgctt
agctgtagcgatgacaccaccttaaggctttgggatatgtcatccatggaaaatgcagta
gtgtatcgtggacacacttaccccgtgtgggccatggatgtctcgcaacagggccagtac
ttcgcgtctgcatcacaagatcgtactgccaaaatttggatgtttgatcgtacttttccc
ttgcggattctagccggccatactgccgatgttgattgtgtgactttccatccaaatgga
ctttacttggctacgggttctgctgatagttctgtccgtatgtggcatgtcgcagagggc
aaaacagttcgcatattggttggccaccgtggcacagttttagccgttgctttcagtcct
tgtggaaagttgttagcttcagctggtgaagatcatcgcgttaagatttgggatgttgct
gctgggtctattcttcatgattatgctggccatcacgatgtaatccatggattagtctgg
atctctgagaatgttcttggctcatacagcgccgacggtaacatacgggtctggaatgtt
acgcagcattcctttcctccgtcacagcaatcacagcaagagcttgcgtcgtattcagtg
tcggcacccacgaaaatcgtacatcttggtcgtggaaaccaatcaactttggtctgcatc
gctgcttcagattag
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