Daphnia magna (water flea): 116930252
Help
Entry
116930252 CDS
T07514
Name
(RefSeq) TATA-binding protein-associated factor 172
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
116930252
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
116930252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
Helicase_C
HEAT
HEAT_EF3_N
TPR_Trm732_C
TOR1L1_N
HEAT_2
HEAT_EZ
Vac14_Fab1_bd
mTOR_dom
Motif
Other DBs
NCBI-GeneID:
116930252
NCBI-ProteinID:
XP_032793539
UniProt:
A0A0P5MI20
LinkDB
All DBs
Position
LG1:complement(14046813..14053670)
Genome browser
AA seq
1792 aa
AA seq
DB search
METRLDRLFILLDTATSSVTRKAAAQQLGEVQRLHPHELPLLLKKIFVHLQNPSWDTRIA
ASQAINAVISHVPQWDPLPLSIKTENDVSLPSGKLSQLRFSTFSISTVLANRHFLTASEG
KEFDDDDFLLADPKERLARQRKALNDNLGLELAAKLGIDTGEIVTAEDLTGQQEHAVNAP
DIPSETPLDDEAEKLKKQLSSREANRAKRKARQGGKQKSLDGSPSDGASSSKKIKKEKEI
EIVIDSIPDPAGTWPDSAQTWPFESFCDLLVTKLLSPCWEVRHGGGTALREIIQLHGRGA
GRTTHQTMPEMKAAHGSWLEDTSLRLLCVLALDRFGDFISDQVIAPVRETTAQALGSLAK
LMDSEQVKSVVAVLLQLLEQTEWETRHGGLLGLKYLMAARQDLSQQLLPLVYPSLFRGLE
DEVDDVSAVAAAALVPLADTLVNLLHLNEIGTLLKTLWDSLLELDELTASTSCILTLLSS
LMARSETVQCLQHLPLVDLVPRLWPFLSHSSSKVRHSTLKTLETLLILGHTTEWMEGLAS
DLLRHVFQRAMLEHQQEILEHIEKLWGLIIRRLSLQILLPAACPCVATWLCMMMQPSRLP
FDTSILIFPPVRKEPSESRRRSTSGPLGDASPVETKYFIAGTDHVYENPLHREKAVIRAR
CLAASMLGLLSEFLVQVMPGLTYSADMESPVECYAKLLLVHLNSRSAIQRTAVAMVMAEW
GERCAAVTPPAVLVDRLHLTLTESIYYDEIGVAYARLLHDARDFIATLRHYRLDVESVFP
SANASFLTPEQIQSLTGPITIQLLTSSKLKSKITEMLEDRRKSLSSACLQVSTDQNKLNN
TTLSALARAVVGFRILPVHTVNPVVKPLMDSIKMEDNEQLQEFAARSLARLLELCQFRNP
CPNNKILKNSCNFLCADPELTPKVNPEEMDGILMLMQQQRLAEKSTGGKKAHVDGDLTSI
RAIEIQRRGAVQMLKSVASYFGPEMPQKVPYLWDSIMSIQTVEESSQNDAVGISKAEDLI
QCLQILEVIVSSVHASLHVQVLDLLPTLCDLLEHPLRAVRHMASRGLAALGAVDGDHVLT
IVIEKVIPMLGAIDREHMRQGAIEAVAYMVEQMGMSIIPFIVLLVIPVLGRMSDTDQSVR
LVATQSFATLIRLMPLEGGVPDPPALSAELSEKKIQQRRFLEQLFDPKKLENYKIPVTIN
AELRCYQQDGVNWLAFLNKYGLHGILCDDMGLGKTLQTICIIASDHHQRKVDFELTRNPS
SAALPSIVICPPTLTGHWMDEVEKFVSADVLNPLHYTGPPSERMRIRNRASHHNLIIASY
DIVRNDLDFFSSIRWNFCVLDEGHVIKNGKTKLSKAIKQLIANHRLILSGTPIQNNVLEL
WSLFDFLIPGFLGSEKQFQARYSKPILASRDAKASSKEQENGVLAMESLHRQTLPFLLRR
MKEDVLKDLPPKITQDYYCDLSPLQVKLYEDFSKKHAELNQPTQASGAAPAHAHIFQALQ
YLRKVCNHPKLVLTPKHPQFEVFHQQLKDQKSNLSDLQHASKLLALKQLLLDCGIGLDAA
NGPVDSSDTGGSVVSIHRALIFCQLRSMIDIIENDLLKTHMKTVSYLRLDGSIAAGARQG
VVKRFNEDPSIDVLLLTTQVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKV
VNVYRLITRGTLEEKIMGLQKFKLQTANTIISTENASLQSMGTEQLLDIFTLDGGKASKN
NKRPSSSEPESASGLPAGFRVALESLPELWSEENYENEYNLDSFISTLNQIK
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggaaactaggttggaccgacttttcatcctgcttgatacagcaacatcttctgtcaca
aggaaagctgctgctcagcaattgggtgaagtccaacgtctacatcctcatgagctgcct
ctgttactgaagaaaatttttgtccatcttcagaatccttcttgggatactcgaattgct
gcctctcaagccattaatgctgtgatttctcatgttccccaatgggaccctctccctctc
tctatcaaaactgagaatgatgtcagtttaccaagtggaaaacttagccagcttagattc
agtacatttagcattagcacagtattggcaaaccgccattttttaacagcatcagagggc
aaagaatttgatgatgatgattttttgttggccgatccaaaagagaggttagctcgtcag
cgtaaagcactgaatgacaatcttggtcttgagctagcagccaagctaggtattgatact
ggagaaattgtcactgcagaagatttaactggacagcaggaacatgctgtaaacgctcca
gacatcccatctgagacgccacttgacgatgaagctgaaaaactgaagaaacaactcagt
tccagggaagcaaatagagccaaacgaaaggcccgtcaagggggaaaacagaaatctctt
gatgggagtccatctgatggggcgtctagtagtaagaaaattaaaaaagaaaaagaaata
gagatcgtcattgatagcatacccgatcccgctggaacttggcctgattctgctcaaact
tggccgtttgaaagcttttgtgaccttcttgtcactaagcttttaagtccctgttgggag
gttaggcatggaggaggaacggctttacgggaaataattcaattacatggtcgtggagcg
ggacgaaccacccatcagacgatgcccgaaatgaaagcagctcacggcagttggctagaa
gatacatctttgcgcctgctttgtgtccttgcattagatcgtttcggcgatttcatttca
gaccaagttattgcgcctgttcgggaaacaactgcccaggctctgggctcattagctaag
ctaatggattctgagcaggtcaagtcggtcgtcgcagttctacttcagttattggagcaa
actgaatgggaaacacgtcatggtggccttttgggcttgaagtacttaatggcggctcgt
caggatttgtctcaacaattgttaccattggtgtatcctagcctatttcgagggcttgag
gatgaagtggatgatgttagcgctgtagctgcggcagctttggtgcccctggctgacacc
ctagtcaatcttttgcacctgaatgagatcggcactttgctcaagaccttgtgggattct
cttcttgaactggatgagctgacagcttcaaccagctgcattcttactttgctgtcatct
ctgatggctcgttcagaaacggttcaatgtttgcaacatcttccgttagttgatttggtt
ccacgactatggccatttctttctcattcttcttccaaggttcgccattcgacgctaaaa
acgttggaaactttgttgattcttggccatactaccgagtggatggaagggctagcttct
gatctcctccgccatgtattccagcgcgcaatgctggagcatcagcaagagatactcgaa
catatagaaaagctgtggggtctgattataagacgactatcccttcaaattttgcttcct
gctgcatgtccttgcgtggccacatggctttgtatgatgatgcagccttcgcgtctaccg
ttcgatacatctattttgatatttccacctgttcgcaaagaaccgagtgaaagtcgacgt
cgaagtaccagtggacctcttggagatgcttctcccgtcgaaacaaaatattttatagca
ggaacagaccatgtctacgaaaatccccttcaccgagaaaaggcggtcatcagagcccgt
tgtctggccgcatctatgttgggtttactctcagaatttcttgttcaagtgatgcctgga
ctgacatactcagccgacatggagtcaccagtggaatgttacgccaaattactgctagtc
catttaaacagccgttcagcgatccagcgtactgcggtagctatggtaatggctgagtgg
ggtgagaggtgtgcagcagtcacaccacctgctgttttagtcgaccgacttcatcttact
ttgaccgaaagcatatattatgatgaaattggtgtcgcatatgctcgtttgttgcacgac
gcgagagatttcatcgctacacttaggcactacaggttggatgtagaatccgttttcccc
tctgccaacgccagtttcctaacaccagagcaaatccaatcattaactggtccaataaca
attcagctcttaactagctctaagctaaagagtaaaattactgaaatgttggaagatcgg
agaaaatctttatcgagtgcctgtttacaggtgtcgaccgatcaaaacaaattaaacaac
actactctgtcggcactagcacgagcggtcgtgggttttcgtattttacccgtgcacaca
gtgaatccagtggtcaagccgttaatggattcaatcaaaatggaggataatgaacaattg
caagaatttgccgcgcgatccttggcgcgcctgctggaactttgccaatttagaaatccc
tgccctaacaacaaaattttgaagaattcgtgcaattttctttgtgctgatccagaactc
acgccaaaagtaaacccagaagaaatggatggcattttgatgttgatgcagcaacagcga
ttagccgaaaaaagtaccggaggtaaaaaagctcatgttgatggtgatctcaccagcatc
cgtgcgatagaaattcaacgaagaggagctgtgcaaatgttaaaatctgtggcttcctat
ttcggaccggaaatgccacaaaaagtgccgtacctttgggattcgataatgagcatacag
accgttgaagaaagcagtcaaaatgatgcggttggaatctctaaagcagaagatttaatc
cagtgcttacagatcctggaggttatagtgtcttccgttcatgcttccttacatgttcaa
gttctcgatttgctgccaacgttgtgcgatcttttggaacacccgttaagggctgttcgt
catatggcaagcaggggactggctgcgctcggagctgttgatggcgaccatgtcctcaca
attgtaattgagaaagtcataccaatgcttggtgccatcgaccgtgaacatatgcgacag
ggagcaatcgaagccgtggcctatatggttgaacaaatgggcatgagcatcataccattc
atcgtcctcttggtcatccccgttcttggtcgaatgagcgatactgatcaatctgtcaga
ttggtggccacgcagtcatttgcaactttaattagactcatgcctctcgaaggaggggta
cccgatccaccagctcttagtgctgagctatcagaaaagaaaatccaacagcggcgcttt
ctcgaacaactatttgatccaaagaaactggaaaactataagatccctgttaccataaat
gcggagttgcgctgttatcagcaggatggtgttaattggttagccttcctaaataaatat
ggattgcatggcattctgtgtgatgatatgggactcggcaagactcttcaaaccatctgt
atcattgcttctgatcatcatcagcgaaaagttgactttgaacttactcggaacccatct
tcggcggccttaccatcgatagtgatatgtccaccgacacttacgggtcattggatggat
gaggtagagaaattcgtctcagctgacgtcttgaatccacttcactatactggacccccg
tccgagcgaatgcgtattcgtaatagagcatctcaccataatctcatcattgcctcgtac
gacatcgttaggaatgacctagattttttcagttctatacgctggaacttctgcgttttg
gatgaaggccatgtcataaagaacggcaaaacaaagctatccaaagcaattaaacaattg
attgctaatcatcgtttgattttgtctggaacgcctattcagaataatgtccttgaactg
tggtctctcttcgacttcctaatacctggctttttgggaagtgaaaagcagttccaggct
cgatacagcaaaccaatcttagctagtcgcgacgctaaagcgtcctcgaaggaacaggag
aatggtgttcttgccatggagtcgctccatcgtcagacgttaccgttcctcctcagacga
atgaaggaggatgtactcaaagatctcccacctaaaattactcaagattactactgcgat
ttaagtcctttacaagtaaagctttatgaagatttctcgaagaaacacgcagaactgaat
caaccaacccaggcgtcaggtgctgcacctgctcatgcgcacattttccaggcattacag
taccttcgcaaagtctgcaaccatccgaagcttgtactgacaccaaagcatccccagttt
gaagtctttcaccagcaacttaaggatcaaaagagcaacctgtctgacttgcagcacgct
agcaaactattggctttgaaacaattgctacttgattgcggcatagggttggatgccgca
aacggacctgttgattcgtcggatactggcggaagtgtagtttctatccacagagcttta
attttctgtcaacttcggtctatgattgatataattgaaaatgacttactcaaaactcac
atgaaaaccgtatcttaccttcgcctggatggaagcattgctgcaggtgctcgtcaaggc
gtcgttaaacgtttcaacgaagatccgtctattgatgtactattactgactacgcaagtt
ggtgggttaggtcttaatctgacaggagctgacacggtcatttttgtcgagcatgactgg
aacccaatgaaagatctccaggctatggatcgtgcgcacaggatcgggcaaaagaaagtg
gttaacgtatatcgtcttatcacccgaggaacattagaagaaaaaatcatgggattgcaa
aagtttaagctacagaccgccaataccatcatcagcacagaaaatgcaagtcttcaatca
atggggactgaacagttactggacattttcacgctggacgggggcaaagcttccaaaaac
aacaaacgaccgtctagcagtgaaccggaaagtgcctctggtcttcctgctggtttccga
gtagcattggaatccctaccagagttatggagtgaggaaaattacgagaacgagtacaat
ctggattcattcatctctaccttgaatcaaattaagtaa
DBGET
integrated database retrieval system
