KEGG   Daphnia magna (water flea): 116930263
Entry
116930263         CDS       T07514                                 
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    116930263
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dmk03400]
    116930263
DNA repair and recombination proteins [BR:dmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     116930263
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT RTT107_BRCT_5 LIG3_BRCT F5_F8_type_C
Other DBs
NCBI-GeneID: 116930263
NCBI-ProteinID: XP_045035517
LinkDB
Position
LG1:complement(4321644..4324513)
AA seq 618 aa
MAPIKFHRVISFSSEDPNQPTENLIKDGAYRKWRCKSGGEQKAWVELQLEKPTLIFAIDI
GNHGSAFIEILVGRSGCPDEEYKTLLNSATFMTPQECRNETNLQRVRIFKNQDLNKATLT
EKWDRVRVVCTQPFNKHLQYGISFITIHAPEESSSKVQNSKSMDFGMFKLKEGQTDDPIK
QGSLFSRFKSSQSPMTSSPSTQPGAIRAASQSLASVALAQSEKEALSILKQSPTKDGRPD
IKLTDKLKTLQYQSPTTSKIFSSNAEIQSLPSRKLVESDRIRSSMPSATPPAKPSNKKID
ENKFKNATPNHSRKEESAKRKAPPSSPSTSVEQLVKKQKITKPFNRLLDDVVVVLSGFQN
PLRSQLRDKLQALGATYKPEWNASCTHLVCAFYNTPKFLEVKGKGKIVTKNWVEDCYAKR
KRLPWRRYCLDKNDRGEESEEEIWAGPEDQNPTSPAPKRNNNVAAPVSKTASSICATPKT
SKVKEDEDDYGGSTEVDEVDTDDEIDMIKRKILQEQNLSKDFQSSNIYNDGKFLLGKDLS
EDVKEELTRYVTDLQGQVVPKRRSSIKYFITDNPDDASIAKVLAKNKEIKIVKSDWIREC
KKQHALVMLDPFLIALSK
NT seq 1857 nt   +upstreamnt  +downstreamnt
atggcacccattaaatttcatcgtgtcattagtttcagcagtgaggatcccaatcaacca
acagaaaacctaattaaagatggagcatacaggaaatggaggtgtaaatctggtggagaa
caaaaagcttgggttgaacttcagctagaaaagcccacactaatctttgccattgacatt
ggaaaccatggctctgctttcattgaaattttagtaggtagaagcggttgcccagatgaa
gaatacaagacactcttgaattctgccacatttatgacacctcaagaatgtcgtaatgaa
acaaatctccagcgtgtgagaattttcaaaaaccaagatttgaataaggccacgctaact
gagaaatgggaccgtgttagagtagtgtgtacccaaccatttaacaagcacctacaatat
ggaatttcatttataactattcatgccccagaggagtcatctagtaaagttcaaaattca
aaaagtatggactttgggatgttcaaacttaaagaagggcagaccgacgaccccatcaag
caaggcagtctgttttctcggttcaagtcgtcccaatcgccgatgaccagttcaccaagt
actcagcctggtgccatccgcgcggcgtcgcaaagtctcgcttcagttgctctagcccag
agtgagaaagaggctttgagcattttgaaacagtcacccacaaaggatggcagaccagac
ataaagttaacagataaacttaaaacattacagtaccaaagtccgacaacttcaaaaata
ttttcgagcaatgctgaaattcagtcgttgcctagtcgtaaactggtagagtcggatcgt
attagatcgtctatgccgtccgctacaccaccagcgaaaccatcaaataagaaaatagac
gaaaacaaatttaaaaatgccacccctaatcattcgcggaaggaagaatcagcgaagagg
aaagcaccgccatcctctccttcgacaagtgtggaacagttagtgaagaaacaaaaaata
accaaaccttttaatcgtctattggatgacgtcgtagtagtactcagtggttttcagaac
ccactacgatcgcagttacgggataagctgcaggccttgggagccacgtacaaaccggaa
tggaatgcgtcctgcactcacttggtgtgtgccttttacaatacgccgaagttcctcgaa
gtgaagggtaaaggtaaaattgtcacaaagaactgggtagaagattgctacgctaagcga
aaacggttaccttggagacgttattgtttagataaaaacgacagaggggaagaaagcgaa
gaagaaatttgggctggaccagaggaccagaatccgacatccccagctcctaaacggaat
aacaatgtagcagcccccgtctctaagacagctagtagtatctgcgcaacgcccaaaact
agtaaagtcaaagaagatgaagacgactacggagggtcaactgaagtagatgaagtggac
acagacgatgaaattgatatgataaagaggaaaattttgcaggaacagaatctctcaaaa
gattttcaatcttcaaatatttacaatgatggcaaatttctgctgggaaaagatttgtct
gaagatgtcaaggaagaacttacccgctacgtaactgatcttcagggtcaagtcgttccc
aaacggagatccagtattaaatacttcattacagacaacccagatgatgcctcgattgcg
aaggtactggcgaaaaataaagaaataaaaatcgttaaaagtgattggataagagaatgc
aaaaaacaacacgctttggttatgctagacccatttctaattgcactgtcaaagtga

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