Daphnia magna (water flea): 116930848
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Entry
116930848 CDS
T07514
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04140
Autophagy - animal
dmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116930848
04148 Efferocytosis
116930848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
116930848
Membrane trafficking [BR:
dmk04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
116930848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
zf-RING_Vps41
Beta-prop_HPS5
zf_RING_Vps8_fungal
WD40_CDC20-Fz
TPR_17
zf_RING_Vps8
zf-RING_5
TPR_19
zf-C3H2C3
TPR_PEP5_VPS11
WD40_WDHD1_1st
WD40_Prp19
Vps39_1
zf-C3HC4_2
WD40
Gin
zf-RING_2
TPR_7
TPR_CcmH_CycH
TPR_12
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
116930848
NCBI-ProteinID:
XP_032794153
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Position
LG9:complement(2007397..2011527)
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AA seq
866 aa
AA seq
DB search
MEETISKFEHDFVEQAAEMSHSFVADDDDEEEEVEPKLKYERLSNDITLILKKDAASCIA
VHPKFMCLGTNWGALHLLDHLGHSSQQQEFPTHGMAIKMVDIDSGGDYIGSCSNDGKVMV
SGLYSTENCHTLMLDRPVKAIALDPLYYKSGSGRRFVTGDDRLILHEKVFLSRLKSTTLF
EGEGLITNIKWKSRFLAWASTTGVRVYDMSIRRVISVVKKDISPGINADNYRCILYWKDD
LTLVVAWADDVKVCVIRRRPDADAERLNLPSYYVEIVSMFNIDSFVAGAGWLGNHLALLV
VPKDEELSGKGQRPQMKLIEPHQESYNEISADVLSIRGFQEYACNEYHLECLAEEGQFFI
VSPKDVVLAKPRNPDDHVQWLMEHQKYEEALEAVTGPQARELKCYSALQVGRTYLDFLLS
NGEFQTAAKLCVKILGKEKNLWEEEVFKFARLHQLRAVTPYLPRGECRLDPHIYEMVLFE
FLKTDSGGFLRLVREWSPNLYNIAAVMNAVLEHILRHDPDDSTLLEALAILYSHEKKYDR
ALAMYLKLQHADVFRLIAQHQLFPTVHDKILALMELDANQACALFLEHSEHIPPDLVVSR
LQTKTPLLFKYLDALYMKEPKEGSRKFHGLLVTLYAEYAQEKLLSFLRSSDYYPIQDALD
ICQQRGYIPEMIFLLARMGNTRDALRLIMGQLKDINQAIEFCKTYDDPELWEQLIGYSLA
KPEFVNVLLRNIGTHVDPRLLIQRIEYGVEVPGLRDSLVKILHDYNLQISLQEESQKILV
SDCFSLHERLVRIHQRGMAIRDDQICGACHQKVIVSDTRKPTAGMVVFFCRHAFHTDCLN
TVDTCPICYAMKLKPNAGIPEKLRKP
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaccatatccaagtttgaacatgattttgtggaacaagctgcagaaatgtcc
cacagttttgtggcagatgatgatgatgaagaagaagaagtcgaacctaagctgaaatat
gaacggctgtccaatgatattacccttatcttgaagaaagatgcagccagttgcattgca
gtacatcctaagtttatgtgtctaggaacaaactggggagctttgcatttacttgatcac
cttggtcattcatcacagcaacaagagttccctacccatggaatggcaataaaaatggta
gatatagatagtggaggagactacattggtagctgctcaaatgatggaaaggtcatggta
tctggactctattctacagaaaactgccatactctgatgcttgatcgacctgttaaagct
attgcacttgacccactatactacaagtctggttctggaagaagatttgtaactggcgac
gataggctcatcctacatgaaaaagtgtttttgtctcgcctgaaatcgaccaccttgttt
gaaggagaaggtttaatcaccaacattaagtggaaaagtagatttctggcctgggcaagt
acgacaggagtacgagtttatgacatgtccatacgtcgagtgatcagtgtagtaaaaaaa
gatatcagcccgggaatcaacgcggacaactaccgctgtattttatattggaaagatgat
ttgacacttgtagtggcttgggctgatgatgtaaaagtctgtgtcatccgacggcgccca
gatgccgacgctgagcggctaaatcttccgtcttattatgttgaaattgtgtccatgttc
aatattgactcgttcgtggctggagctggatggttgggcaatcatttagctcttttagtg
gtacctaaagatgaagaactatcgggtaagggtcaaagaccccaaatgaagttgatcgaa
ccgcatcaggaaagctacaacgagatttcggcagatgttctatcaattcgtggctttcag
gagtacgcttgcaacgaatatcacttggaatgtttggctgaagagggccagtttttcatc
gttagtccaaaagatgttgtcctggcaaagccccgaaatcctgatgatcacgttcagtgg
cttatggaacaccaaaagtatgaagaagctttagaggccgttacgggacctcaagcccgt
gaactaaagtgctattccgctctccaggtcggtaggacttacctcgatttcctcttatcg
aatggggagttccagacggcggcaaagctctgtgtcaaaattcttggtaaagagaaaaac
ctttgggaagaggaagtgttcaaatttgcacgattgcatcagctacgcgccgtgactccg
tatcttccacgaggcgaatgcagattagatccccacatttacgaaatggttctctttgag
tttcttaaaacagactctgggggttttcttcggctcgtgcgagagtggagtcccaacctt
tacaacattgcggctgtaatgaacgccgtcctcgaacacattcttcgtcatgatcctgat
gactccaccctcctagaagctttggctattttatattcgcacgaaaagaaatacgatcga
gccctggccatgtacctcaaacttcagcatgctgatgtttttcgactaattgctcagcat
caactcttcccgacggttcacgacaaaatactcgcgttaatggaacttgatgccaatcaa
gcgtgcgccttattccttgaacacagcgaacacattccacctgatctagtcgtttcacgt
ctgcagaccaaaacgccattattatttaagtatctggatgccttatatatgaaagaacca
aaagagggcagccgaaaattccatggattattagttacattatacgccgaatacgcccaa
gaaaaactgctttcctttctccgcagcagcgactactaccctatacaagatgcattagat
atttgccaacaaagaggatacatcccggaaatgattttcctgttggctcgcatgggcaat
actagagacgctcttcgtctgattatgggccagttgaaggacatcaatcaggctattgaa
ttttgtaaaacttatgacgatccagagttatgggagcaattaattggatattctctagcc
aaaccagagtttgttaacgttttattgcgtaacattggtacgcatgtcgatccacgtctg
cttatacaacggatagaatatggagtagaggtgcccggtctacgcgattcacttgtcaaa
atcttgcacgactataatttgcagatttcgctgcaggaagagagtcaaaaaattctagtg
agcgattgtttcagtcttcacgaaagactagttcggattcaccaacgaggcatggcaatt
cgggatgatcagatttgtggagcctgccatcaaaaagttatagtttccgataccagaaaa
ccaacggccggaatggttgtcttcttctgccgtcacgcatttcacaccgattgcctcaac
acagtggatacatgccctatctgctatgctatgaagctgaaacctaacgctggaattcct
gaaaaattgcgaaaaccctga
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