Daphnia magna (water flea): 116931182
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Entry
116931182 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116931182
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116931182
Spliceosome [BR:
dmk03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116931182
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
Helicase_C
DEAD
Ank_2
Ank
ATPase
nSTAND3
IF2_N
HA2_N
TsaE
Motif
Other DBs
NCBI-GeneID:
116931182
NCBI-ProteinID:
XP_032794590
LinkDB
All DBs
Position
LG9:3380696..3386008
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AA seq
1270 aa
AA seq
DB search
MEKYNTSLAVAKVDVVNERIDQHMCQFFHTEVLKKLSQDGQTEEMLLPSALNNLKEQKAF
IFQLSDGMGMNIKSSRNTNIVLTKKPDAVRSQFNFLQLAHASTVLLAEDAKNVCLENENP
QGVRYDKTNRGKPSDHFLPLNMNRSAGRLNISDNPPYIPLFGESAACVHHRRSLPIFPYR
QEILWQLERQQVVVIAGDIGCGKTTQVPQYILENAYEKSVPCRIVSIQPRRLSVHAALDR
VIVERGVTGERLVGHQTRLESKGTANCPLIFCTTGVFLRSLIESDCCLKGITHVIIDQVH
ERDRFTDLLLGVFRLRLSQYPDLRLILLSANMAPHALANYFHQEKIIKIPVPSHPVSELF
LEDILTCTKFLSKQRILVGAGGVQDELTMGPATAFDELITEAWFNGSDLIFLHILKLVRD
GAMPIDYQHSQTGITLLMASANHGKLDIVKMAISLGANPTLQVKGMTPYDLANEFARPEV
ADLLLSYSQVFTNEVGNNINMQEPSSLNQNSPDDVLKSFYAKYSQDHANLDLIVEVLNFV
LGYSQPGAVLVLLPAYSEVVELRDMIIASTSSLKNKLEVHTLHGHLPPTDFKKIFLPAAA
DKRKVILATNIAETSISFDDVICVIDSGLFRDRENDVVFTNPKKTQWISKASAAQRVMHV
RNGGIVFHLYPRSRLDGLQEYPVPEITRDSLIDVCLFARLVIPEDMRLPQFFCSLPDGPP
TTAVHQAIEILESIDAFDIQSKVTDVGLHLIDLSVEPRLGKMLLVAVGLRCLDPVLTIIC
CLARDDPFITPASPDERKIAIMRRYDLAPDFLSDHLALLRAYHLWEKANDEGRKRQVCQE
NYLSVANIELIFLLRVLLVGELRASGYIRGRGCADIRNLNIHSESWTAIKAALTSGLYPN
LARYSPVDGGIITQNETRSQFHFTSTLLVQEGRNNGLGFIATPSIESLPPVNPLAQKHSS
KLAASALASPWVIFEDQQRAGQFTVLRCCSVITPITALLFAGHLGSPIHTVQLNQNDYQE
ILNNLGESDDDSDDIDDDEMRKICQDLNFQHIAEDIIGLSRVTKKNRVLARPRKHFVILK
IDEFIGFLVDAYVAQLIMQIRKKFQTVLVKCIREPGRNCTIGEDSVLRTVLSLLSSEEMA
MRLPQPSGVGRRPTNVSADSMLVTPELRPEDLYPIRRYMTYTPPPKGYSYESKECNNSNM
MSSISSAASRNRIKPSRLNKTDFREMFPNPKSVQTMNLSYQGIPSVLPNVTPVGGRPICK
SYSYSFSDDH
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagtataatacatctcttgctgttgctaaagtagacgttgtaaatgaacgaatc
gaccaacatatgtgccagttcttccacactgaggttctgaaaaagctcagccaagatggt
caaacagaagaaatgcttttgccatctgcactcaacaatctcaaggagcaaaaggctttc
atttttcagctttctgatgggatgggcatgaatattaagtcttccaggaatacaaatatt
gtgttaacgaagaagccagatgctgttagaagtcagtttaattttctacaactggcccat
gcttcaacagttcttcttgctgaagatgcaaaaaatgtctgtcttgaaaatgaaaatcct
caaggagtacggtatgacaaaaccaatagaggaaaaccctctgaccattttttgcctttg
aatatgaacagaagtgccgggcgtttaaacatatctgataacccaccttacataccgctc
tttggcgagagcgctgcctgtgtgcatcaccgccgaagtctaccaatttttccatatcgt
caagagattctgtggcagttagagcgccaacaagtagttgtcattgccggtgacataggc
tgtggcaaaacaactcaagttccacagtacatcctggaaaacgcctacgaaaaatcagtc
ccttgccggattgtcagcattcagccacgtcgtctctctgtccatgctgcacttgatcgt
gtcatagtagaacgaggtgtaaccggggaaagattggtggggcatcaaacacgacttgaa
tcaaaaggcacggctaattgccccctaatattttgcacgactggagtgtttcttcgttcg
cttattgaaagcgattgttgtcttaaggggataacgcacgttataattgatcaggtccac
gagcgtgatcggttcactgacctcctgttgggtgtatttcgcctgaggttgtctcagtac
cctgatttgcgacttatccttctatcggcaaacatggcgccccacgcactggcaaactac
tttcaccaggaaaagataatcaaaattccagtcccttctcatccggtatcagaacttttc
ctggaagacattctcacctgcacaaaatttttgtctaagcaaagaatcctagttggggct
ggaggggtgcaagatgaattgaccatgggtccagcaaccgcttttgatgaacttatcact
gaggcgtggttcaatggttccgacttgatttttttgcacattttgaaactcgtacgagat
ggtgccatgcccatcgactaccagcactcccagaccggcatcacgctgctgatggcaagc
gcaaatcatggaaaactagatattgttaagatggctatctccttgggggccaatcctacc
cttcaagtcaaaggcatgacgccatatgacttagccaacgaatttgcccgcccggaagtg
gccgatttgcttttgtcatacagccaagtcttcaccaatgaagtgggcaacaacattaat
atgcaggagccttcatctttgaatcaaaattctcctgatgatgttctgaagagcttttac
gcaaagtacagtcaagaccacgccaacttggatcttatcgttgaagtgcttaacttcgtt
ttgggttactcccaacctggagctgttcttgttttattgccagcttatagtgaggtggta
gaactgagagacatgattattgccagcacttcatcgcttaaaaacaagttggaagtgcac
accttacatggacacttaccgccaacagatttcaagaaaatattcttgcccgctgcagca
gacaaacgcaaagtcatattggcaacaaacattgccgagaccagtattagctttgacgat
gttatttgcgttattgattcgggacttttccgtgacagggagaacgatgtagtgttcacc
aaccccaaaaagacccagtggatatcaaaggcttctgcagcacagcgtgtcatgcacgtc
cgcaatggtggaattgtctttcacctgtatccacgttcgagattggatggtctgcaagag
tatccagtgccagaaataactcgtgattccttgattgacgtatgtctatttgcccgcttg
gttattcccgaagatatgcggttgcctcagttcttttgcagcttgcccgatggtccccca
actaccgctgtccatcaggctatagaaattctcgagtcgatagatgctttcgacatccaa
agcaaggttactgatgttggcttacatctgattgacttgtcagttgagcctagattgggg
aaaatgttgcttgtagctgttgggctcaggtgcctcgatccagtgctaacaattatctgt
tgcttagccagagatgatccgttcataacacccgcctcccccgacgaacgtaagatagcg
attatgcggaggtatgacctggcaccggattttctgagcgatcatctggcgttattgaga
gcttatcacctgtgggagaaggctaatgatgaaggtcgtaagcgtcaggtctgtcaagaa
aattacctttcggtcgccaatattgagctgatctttttgctgcgggttcttctagtcggc
gaattgcgtgctagtggatatattcgaggtcggggctgcgctgacatacgcaacctcaat
attcattcggaaagttggacggccattaaggcagcattgacttcgggtctgtatcccaac
ctagcgcgttattcaccggtagatggcggaatcataactcaaaacgaaacacgatcgcag
tttcattttacttctacgcttctggtgcaagaaggccgaaataatggcttgggttttatt
gcaactccttcaatagaaagcctgccacctgtcaatccgttggcccagaaacattcatca
aaactagctgcctccgccttggccagcccgtgggtaatttttgaagatcagcaaagagcg
gggcagttcaccgtacttcgttgttgcagtgtaattacacccatcacagcccttcttttc
gctggtcatttgggttcccctattcacactgtgcagctcaaccagaacgactatcaggag
atactcaataatttgggggaaagcgacgatgactcggatgacatagatgacgatgaaatg
cggaaaatttgtcaagatttgaattttcaacacatcgccgaggatatcataggcctcagt
agggtcacaaagaaaaacagagtactagcaagaccacggaaacattttgtcatattgaaa
atcgatgaatttattggattcctcgtcgacgcttatgtggcgcagcttatcatgcagatt
cgaaaaaaattccagaccgttctggtcaaatgtataagagaaccaggaagaaattgcacc
attggggaagacagcgtactgcgtaccgtgctaagtttgctctcgtcggaagaaatggct
atgcgccttcctcaaccatctggggttggacgacgccccactaacgtctctgccgactcc
atgctggttactccagagctcagaccagaagatctgtatccaatcaggcgatacatgacc
tacactcctccgcccaaaggctattcttacgaaagcaaagaatgcaacaacagcaacatg
atgtcatctattagttcagctgcatctagaaaccggattaagccaagccgactgaacaaa
actgattttcgggagatgttcccgaatcctaaatctgtacaaaccatgaatttaagctac
caagggatacccagcgttctgccaaacgtcacccctgttggtggtcgccctatctgcaag
tcttatagttatagcttctctgacgaccactaa
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