Daphnia magna (water flea): 116931252
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Entry
116931252 CDS
T07514
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03440
Homologous recombination
dmk03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116931252
03460 Fanconi anemia pathway
116931252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116931252
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116931252
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
116931252
FA (Fanconi anemia) pathway
Downstream FA components
116931252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
116931252
NCBI-ProteinID:
XP_045034918
LinkDB
All DBs
Position
LG9:complement(387302..438560)
Genome browser
AA seq
1120 aa
AA seq
DB search
MEISVVKKKILQINPSYERAKREQTKIPIPLSFSRHFLLSDPVPSPRCFSSVFSFFVLEV
ILLKLSNANQQTSSKMATTVGPDGRPHYVYTISGVRVEFPAKAYPSQIAMMDKVIRGLQR
GQHCLLESPTGSGKTLALLCASLAWQRAEAENVRKFNEAVEASARANLKSVPIQSADATE
TQLGLPSSANWNTREPIKSESVYLADNSNVKEESVSDMSAFYSDDNSDDDFKMPTKKRTK
MSKSPPGRAAIRPAAGTAVKMEDVKKERVTLSTDGQVESPAEQAFIQRKQRIPKIFFGTR
THKQITQVVKEFRRTVYCNTPMGVLASRDHTCIHPQVSRSANKNEGCKTLNDRRLARQDP
QQKGGCSYRWQGKEKLKTQGQIRSYGLDKGWDIEDLVSLGRRIRVCPYYGSRDLAEQAQI
VFSPYNYLIDPRVRRSMKIPIDKNVIILDEAHNIEDCARESAGGSWSQEDFHLALNDCEK
IGNRHPTMEREIDQLAQFCSYMMQWIGKHAPKMKSVGFDREVHVMTGTEFVANLSVDGYG
PEPLAELKKIIDYIFSEQLESDYNDKEENEEPQLSAVTQALLEGFLMIVDLMLSGNHVRR
DDYRAVVVRTVERKQKKGAGSSFFGKANIASQWTYALNLWCLNSAVVMHEIKESTRSIIV
TSGTLSPMASYQSELDIDFKLTLEANHVIPAQRVWIGTISQGPKNSLLNGTFKVTGTFEY
QDELGRLLLSVCQTIPHGVLCFLPSYSLLEKLVARWQDTGLWQHLSTLKTIVCESRDSRD
FEETLKSFYSAIEDSENALSCNLNGSCELSDESPGKKKSDFPSGAVMLAVCRGKVSEGLD
FTDNNARAVVCVGIPFPNFKDTQVELKRQYNDKLSATTPLLNGSEWYEIQAFRALNQALG
RCIRHKADWGAILLVDDRFAKTPRYVNQLSKWVRSSIRHFNCFPPMLNSLKEFADNFVAE
DAASLIASQQQLILSTQQESQSSTAMVVSSPYFDRSSAAAAVAVSSPQVVYVSEDEGNSL
LSENDISVVEPSPVKINPRSHEMNATPVRPPYSKTAPVAALHPQEMKAAPVRHSLAGKKP
FATLLGNSNKLSMSQRKLAAENGSHYFQFMDPTSGNSKFS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggaaatttctgtcgttaaaaaaaaaattcttcagataaatccaagttacgaacgcgcc
aaaagagagcagacgaaaattccaattccgttgtcattttcccggcattttttgttatcc
gatcctgtcccttcaccacgttgtttttcttctgttttcagtttcttcgtccttgaagtt
attttattaaagctatcaaacgcaaaccaacaaaccagttcgaagatggccaccacagtc
gggccggacggacgtcctcactatgtctacacaatcagtggtgtccgtgtcgaatttccg
gccaaagcttatccctcgcagattgccatgatggataaggtgatacgaggattgcagcgt
ggccaacattgtctactagagagtccgaccggatccggcaaaacattggccttgttgtgt
gccagtctggcgtggcaaagagcggaagcagaaaatgtccgaaagttcaacgaagccgtc
gaagccagcgcgcgggccaacctcaaatcggtcccaatccaatcagctgatgccaccgag
actcaactgggcttaccgtcgtcggcaaactggaacactcgagagcccatcaagagcgag
tcggtttatttggcagacaactcgaatgtgaaggaggaatcggtcagcgacatgtcggcc
ttttattctgatgacaacagcgatgacgatttcaaaatgccgaccaagaaaagaaccaag
atgtcgaaatcgccgccaggaagggcggccattcggccagcagctggaacggcagtcaaa
atggaggacgtgaagaaggagagagtaacgttgtcgacggatggacaggtcgagtcacct
gccgaacaagcgttcattcaacgcaagcaaaggattcccaagatttttttcggaacgcgg
acgcacaagcaaatcactcaagtggtcaaagaatttcgccgcaccgtctactgcaatacg
ccgatgggcgtgttggccagtcgggatcacacttgcatccaccctcaggtgtcgcgttcc
gccaacaaaaacgaaggttgcaaaacgttaaatgaccgccggttggcccgacaggatccg
cagcaaaagggtggatgttcctatcgttggcaaggcaaagaaaagctcaaaacgcaagga
caaattcgcagttatggcttggacaaaggctgggatatcgaagatctggttagtttaggt
cgacgaattcgcgtttgtccgtactacggttcgcgcgatttagcggagcaagcgcagatc
gtgtttagcccttacaattacctgattgatccgagggtgcgtcggtcaatgaagatccct
attgataagaatgtcatcatcctcgatgaagcgcataatatcgaagattgtgcccgcgaa
tcggcaggcggttcttggtcgcaagaggattttcatttggccctcaatgactgcgaaaaa
attggcaaccggcacccaacaatggaaagagaaatcgatcagctggcccaattctgctcg
tacatgatgcaatggatcggcaaacacgcaccgaagatgaagagcgtcggctttgaccgc
gaagttcacgtcatgacgggcacggaatttgtagccaatttgagtgtcgatggttacggt
ccggaaccgttggccgaactgaaaaagatcatcgactacatcttcagcgaacaactcgag
tcggactacaacgacaaggaggagaatgaagagccgcagttgtcggccgtcactcaggct
ctgctcgaaggatttctcatgattgtcgatttgatgttgagtggcaatcacgtccgccgt
gacgactaccgagctgtcgtcgtccgtactgttgagaggaaacagaaaaaaggagcaggg
tcatcattttttggcaaagccaacatcgcgtcgcaatggacgtacgccctcaatttgtgg
tgtctcaattcggccgtcgtgatgcacgaaatcaaggagagtacgcgctccatcatcgtc
acgtcaggtacgctgtcacccatggcttcgtatcagtctgaactcgatatcgatttcaaa
ctgactctggaggccaatcatgtcattccggcccaacgggtctggattggcaccatctcg
caaggacctaaaaacagtctgctcaacggaaccttcaaggttactggcactttcgaatat
caggatgaactgggccggttgttattgtccgtttgccagacgattccgcacggtgtcttg
tgtttcctgccctcttacagcctgttggaaaagctcgtcgcccggtggcaggacactggt
ctgtggcaacatttgtccaccttgaaaacgattgtgtgcgagtctcgagattcgcgcgat
ttcgaagaaacgttgaagagtttctattcggccatcgaagacagcgaaaatgccttgagc
tgcaatttgaacggctcgtgcgagttgtccgatgaaagtcccgggaaaaagaaaagtgac
tttcccagcggggccgtgatgctggccgtgtgtcgagggaaagtcagcgaagggttggac
tttaccgacaataacgcacgagctgtcgtctgtgttggcattccctttcctaatttcaaa
gacactcaagtcgaacttaaacggcagtacaatgacaaattatcggccactactcctttg
ctcaacggaagtgagtggtatgagattcaagccttcagggcattgaatcaagcacttggt
cggtgcatcaggcacaaagccgattggggagccattctacttgtggatgaccgttttgca
aaaacgccgcgatacgtcaaccagttgtccaaatgggtccgctcttctattcgccacttt
aattgtttcccacccatgttaaattcgctaaaagaatttgcggataattttgtggccgaa
gatgctgcttctttaattgccagccagcagcaattgattctatctacgcagcaagaatct
caatcgtctactgccatggtcgtttcctcgccgtattttgacagatctagtgctgccgcc
gctgtggccgtctcatcgccgcaagtagtttacgtatcggaagacgagggcaattccctt
ctatctgaaaatgatatttcagtagttgaaccttcgccggtgaaaatcaacccacgttcg
cacgagatgaacgcaacacccgtcaggcctccttatagtaaaacggcgcctgttgctgct
ctgcatccgcaagagatgaaggcggcgcctgtccggcattccctggccggcaagaaaccc
tttgcgactttgttaggaaactcaaacaaattgtcgatgtcgcagagaaaattggctgcc
gaaaacgggtctcactatttccaattcatggacccaacttccggaaatagtaaattttct
taa
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