KEGG   Daphnia magna (water flea): 116931263
Entry
116931263         CDS       T07514                                 
Name
(RefSeq) exosome complex component RRP42
  KO
K12589  exosome complex component RRP42
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116931263
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dmk03019]
    116931263
Messenger RNA biogenesis [BR:dmk03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     116931263
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     116931263
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 116931263
NCBI-ProteinID: XP_032794735
LinkDB
Position
LG1:17213591..17215177
AA seq 290 aa
MAEILLSEAEKAFIHHGVQDDLRCDGRTRLDYRPIILETGLVSNASGSSRLRLANSDVLV
GVKVELASPLSEKPSEGRLEFFVDCSANATPEFEGRGGEDLANEICRFLQMSYMSGDTIN
LAELSVLTGQQCWVLYVDILILECGGNLYDTVSLAVKSALYTTQIPSIKVATMDGDQPEL
ELSEDPYDTKRLNTQNVPCLVTLMKIGNHYLVDPTPEEECCSSSGVVVAVSGTKKITAVR
KIGSGSLHPESLVSMLKTASEVGTVVNKILMNKLLEEERAGKTQKVGFMR
NT seq 873 nt   +upstreamnt  +downstreamnt
atggcagaaatacttttaagtgaagctgaaaaagcttttattcatcatggggtacaggat
gacttacgatgtgatggcaggacaagactagattatcgtcccataatccttgagactggt
ttggtttccaatgctagtggctcatcaaggcttagacttgccaactctgatgttcttgtg
ggagtcaaagttgaattggcttcaccgttatctgaaaaaccttcggaaggaaggctggaa
ttctttgtggactgctctgcaaatgcaacaccggaatttgaaggaagaggtggtgaagac
ttggcaaatgaaatatgcagatttttgcagatgtcttacatgtcaggagatacaataaat
ttagcagaactctctgttttgacaggccaacaatgttgggtcttatatgttgacatattg
attcttgaatgtggtggaaacctgtatgacacagtgtcattggccgtaaaatctgctctt
tatacgacgcaaattccgtccattaaagtagcaaccatggatggagatcaacctgaatta
gagctgtccgaagatccttacgatactaagagattaaacacgcaaaacgtaccatgtctc
gtaacgctgatgaaaattggaaaccattaccttgttgatccgacaccagaagaagaatgt
tgcagttcttcgggtgttgttgttgcagtatctggtaccaagaagataacggctgttagg
aaaatcggctctggaagcttacacccagaaagcctagtgtcaatgctcaaaacagcaagc
gaagtaggcacagttgttaacaagattcttatgaacaagctattggaggaagaaagggcg
gggaaaacccaaaaagtcggtttcatgcggtga

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