Daphnia magna (water flea): 116931263
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Entry
116931263 CDS
T07514
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116931263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116931263
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116931263
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
116931263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
116931263
NCBI-ProteinID:
XP_032794735
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All DBs
Position
LG1:17213591..17215177
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AA seq
290 aa
AA seq
DB search
MAEILLSEAEKAFIHHGVQDDLRCDGRTRLDYRPIILETGLVSNASGSSRLRLANSDVLV
GVKVELASPLSEKPSEGRLEFFVDCSANATPEFEGRGGEDLANEICRFLQMSYMSGDTIN
LAELSVLTGQQCWVLYVDILILECGGNLYDTVSLAVKSALYTTQIPSIKVATMDGDQPEL
ELSEDPYDTKRLNTQNVPCLVTLMKIGNHYLVDPTPEEECCSSSGVVVAVSGTKKITAVR
KIGSGSLHPESLVSMLKTASEVGTVVNKILMNKLLEEERAGKTQKVGFMR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaatacttttaagtgaagctgaaaaagcttttattcatcatggggtacaggat
gacttacgatgtgatggcaggacaagactagattatcgtcccataatccttgagactggt
ttggtttccaatgctagtggctcatcaaggcttagacttgccaactctgatgttcttgtg
ggagtcaaagttgaattggcttcaccgttatctgaaaaaccttcggaaggaaggctggaa
ttctttgtggactgctctgcaaatgcaacaccggaatttgaaggaagaggtggtgaagac
ttggcaaatgaaatatgcagatttttgcagatgtcttacatgtcaggagatacaataaat
ttagcagaactctctgttttgacaggccaacaatgttgggtcttatatgttgacatattg
attcttgaatgtggtggaaacctgtatgacacagtgtcattggccgtaaaatctgctctt
tatacgacgcaaattccgtccattaaagtagcaaccatggatggagatcaacctgaatta
gagctgtccgaagatccttacgatactaagagattaaacacgcaaaacgtaccatgtctc
gtaacgctgatgaaaattggaaaccattaccttgttgatccgacaccagaagaagaatgt
tgcagttcttcgggtgttgttgttgcagtatctggtaccaagaagataacggctgttagg
aaaatcggctctggaagcttacacccagaaagcctagtgtcaatgctcaaaacagcaagc
gaagtaggcacagttgttaacaagattcttatgaacaagctattggaggaagaaagggcg
gggaaaacccaaaaagtcggtttcatgcggtga
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